Detail information of GWHGAAEX006313/evm.TU.scaffold_18.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|410669477|ref|YP_006921848.1| | 7.00E-38 | cation transporter, P-type ATPase [Methanolobus psychrophilus R15] |
| KOG | KOG0209 | 0 | P-type ATPase |
| nr | gi|672140287|ref|XP_008793945.1| | 0 | PREDICTED: probable manganese-transporting ATPase PDR2 [Phoenix dactylifera] |
| Swissprot | tr|Q9LT02|PDR2_ARATH | 0 | Probable manganese-transporting ATPase PDR2 |
| trEMBL | tr|F6HGI4|F6HGI4_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB51330.1} |
| TAIR | AT5G23630 | 0 | phosphate deficiency response 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000015 | 1992770 | 2091289 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006313
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00122.19 | E1-E2_ATPase | 256 | 466 | 1.40E-17 |
| PF00702.25 | Hydrolase | 483 | 711 | 3.10E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016887 | Molecular Function | ATPase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 69.220 |
| SRR2545915 | Juvenile tuber | 64.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.790 |
| SRR5643514 | five period of Gastrodia elata | 37.030 | |
| SRR5643515 | five period of Gastrodia elata | 37.710 | |
| SRR5643524 | five period of Gastrodia elata | 39.160 | |
| SRR5643525 | five period of Gastrodia elata | 34.790 | |
| SRR5643528 | five period of Gastrodia elata | 32.300 | |
| SRR5643658 | five period of Gastrodia elata | 37.840 | |
| SRR5643659 | five period of Gastrodia elata | 37.470 | |
| SRR5643660 | five period of Gastrodia elata | 38.550 | |
| SRR5643661 | five period of Gastrodia elata | 32.580 | |
| SRR5643662 | five period of Gastrodia elata | 36.890 | |
| SRR5643663 | five period of Gastrodia elata | 39.630 | |
| SRR5643664 | five period of Gastrodia elata | 36.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 45.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 59.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.52 |
| Juven | Juvenile tuber | 60.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.86 | |
| Mother_Juven | Mother tuber of Juvenile | 48.73 |