Gene detail

Detail information of GWHGAAEX006314/evm.TU.scaffold_18.48

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383453816\|ref\|YP_005367805.1\|	5.00E-25	RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
KOG	KOG1427	0	Uncharacterized conserved protein, contains RCC1 domain
nr	gi\|672135191\|ref\|XP_008791260.1\|	0	PREDICTED: LOW QUALITY PROTEIN: protein RCC2 homolog [Phoenix dactylifera]
Swissprot	tr\|Q9FN03\|UVR8_ARATH	3.00E-31	Ultraviolet-B receptor UVR8
trEMBL	tr\|K3Z550\|K3Z550_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si021668m}
TAIR	AT1G19880	0	Regulator of chromosome condensation (RCC1) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000015	2109846	2164430	+

Transcript Sequence
>GWHTAAEX006314 AAAGCCCGCGATAATGTAAGGTGCTCGTTGCAACATCACGCTGTCGCTCCAATCGAAGACCAGATAAAGAGGGTACAGGAAAACCGTGCGCAGCAAATCCCAAAATTTCCTTAGGCATTTTTTTTAATATCCTATATTAGGGCAACGGGGAGCAGCTCCAGCTCCAGCTCCACCACAAGGTTATCGCCTTTCCAAATGCCGCCGTTCAGAGATGCGAATAAGCACGAGGAGGGCGATGAGGCGGCCCTTGCTGGCGGTGAGCTGCTGTACTGTGGCGGCACGGTCTGGGAGTCCATGGGAAGGAAGGCGACGGCAGCTGAAAACAACCTTGTGTCGCCGACACGACTTCGTACTCTTGTTGGGGTGACTATTCGTTTTGTCGCATCTGGTTGCACATCCTGTCATTGTGTGGCTTTAGATATTGAAGGCCGCTGCTATACTTGGGGACGCAATGAGAAAAGTCAACTGGGGCATGGAGATACTCTAAATCGCAATCAGCCAACAATTGTTAATGGATTATTAAAGCATAAAATAGTCGGTGCTGCTACTGGAAGGAATCATACTGTGATCATTACCGATGATGAAAAGTCATTCTCATTTGGCTATAATAAGCATGGACAATTGGGGACAGGCTCTACAAAAAATGAAATCGAGGCATTTCCTGTAGCGTCATTGGTTTCTGAAGTCACAACTGCTGCTTGCGGTGCTGATTTTACTACTTGGCTATCATCTGCGGAAGGCTCTTCTATACTAACCGCTGGTCTTCCACAATATGGACAACTTGGGCATGGCACTGATAATGAGCACAACACAAAAGAGAGTTCTGTTAAATTAGCTTATGAGCCTCAGCCTCGACCTCGAGCTATAGCTTCTCTGTCAGCAAAAACTATTACAAAAGTTGCTTGTGGAACAAACCACACAGTTGCTGTGGATTCAGATGGCTTTGTTTACACGTGGGGTTTTGGTGGTTATGGAAGACTGGGTCATAGGGAACAAAAAGATGAATGGATACCACGTGTTGTGGAAGTTTTCCAAAGGAAAAACGTTCTTCCACTTGATGCCGTTGTTTCTGCTGGTTCTGCTAGTTCAGCTTGCACTGCAGTTGGAGGGCAGTTGTACATGTGGGGAAAAGTGAAGAACACTGGCGATGAATGGATGTATCCAAAGCCAGTTATGGACCTAAGTGGATGGAACATCCGTTGTATGTCTTCCGGCAATATGCATCATGTTATTGGTGCTGATGAATCATGTATAAGTTGGGGCTATTCTCAGCATGGAGAGCTTGGTTATGGTTTATTGGGTCCGAAATCTTCTGCCAATCCCAAAAAGGTTGACATTCTGGAGGGCATGCATGTTAAAAGTGTGGCTTGTGGACTTGGTCTTTCTATGATTGTTGTTGATCGAAAAAATGTTGGTGATCGCCTGGATAAGTTGGAATTTTATGATGGTGGAGATACTGAAGGTACTGTGGAGAAAAATGATGACATGACTAGTGACATGAATAATAAAAGGGAAGCAAAATTATCCTCCAAGAAAAAAAGGCATCAGGCGGATGATATATCTGAAGAGTGTGAAGGCGGAGAGCCTGAAAGTGATGATGATGTTGAAGACGATGAGGCTAACGGCGAGTCTGTTGGTGGTACAAAAAAGAGCAAACGGGGAGGGAAGTCTTCTAGAAGGGGTCGTGGCAAGGGAGGCAGGGTGGCTACCCAAAAGAGTCCCGACGTCCAAGGGAGGGGCTATCCTAAGACTGAGGGTAAAGGCAGCACCACTGGTCGTGGTAGGAAGAAGGCCAAAAAGACTTGATTGATACTTTTCATGCCAGCTTATGTAACCAACTTTGTCTTGAGTTTGAGTTTCCTTACTAAAGAACTCTCTGACTAACCTATTAGATGATGTCTTGGTATCCAATACATCATTTTTAGCAGCTGATGTAGCTATATGGCTAGCCATCCAAAAGGGAGAAATTTAGTTTTTGTAATGGTGTTTAGTTGCTCAAAGTATTAATTCCTTCAGGGCTTAGGATGAATTTATTTAACCGATTATTTATAATGCTTGTTCCAAATTATCTTTAGTGTTTCTCTGAACGTGTACTCAACTAGAACTATTCAGCCATTATTATGAATATAATACATTTTCATCCAC

Network for GWHGAAEX006314

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00415.17	RCC1	77	126	3.30E-13
PF00415.17	RCC1	133	174	7.50E-07
PF00415.17	RCC1	186	245	3.30E-09
PF00415.17	RCC1	248	295	3.80E-08
PF00415.17	RCC1	354	399	2.50E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.150
SRP064423	SRR2545915	Juvenile tuber	71.890
SRP108465	SRR5643513	five period of Gastrodia elata	57.680
	SRR5643514	five period of Gastrodia elata	46.640
	SRR5643515	five period of Gastrodia elata	44.590
	SRR5643524	five period of Gastrodia elata	43.480
	SRR5643525	five period of Gastrodia elata	28.750
	SRR5643528	five period of Gastrodia elata	20.600
	SRR5643658	five period of Gastrodia elata	23.270
	SRR5643659	five period of Gastrodia elata	62.070
	SRR5643660	five period of Gastrodia elata	62.500
	SRR5643661	five period of Gastrodia elata	55.170
	SRR5643662	five period of Gastrodia elata	53.420
	SRR5643663	five period of Gastrodia elata	53.620
	SRR5643664	five period of Gastrodia elata	51.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	49.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.540
SRP279888	Gastro	Gastrodia elata tuber	71.15
	Juven	Juvenile tuber	95.44
	Mother_Gastro	Mother tuber of Gastrodia elata	53.81
	Mother_Juven	Mother tuber of Juvenile	74.67