Gene detail

Detail information of GWHGAAEX006317/evm.TU.scaffold_18.53

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15669074\|ref\|NP_247879.1\|	1.00E-12	replication factor C large subunit [Methanocaldococcus jannaschii DSM 2661]
KOG	KOG1970	2.00E-153	Checkpoint RAD17-RFC complex, RAD17/RAD24 component
nr	gi\|672160683\|ref\|XP_008800127.1\|	0	PREDICTED: cell cycle checkpoint protein RAD17 isoform X4 [Phoenix dactylifera]
Swissprot	tr\|Q9MBA3\|RAD17_ARATH	6.00E-154	Cell cycle checkpoint protein RAD17
trEMBL	tr\|K4A768\|K4A768_SETIT	1.00E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si034724m}
TAIR	AT5G66130	2.00E-153	RADIATION SENSITIVE 17

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000015	2314510	2379761	+

Transcript Sequence
>GWHTAAEX006317 CAACGCTTTGCCAAGACGCGAATCCCTCGTTCGTCGACACATTTCCCTTGAAGCGTGAGTTTGCAGTGTGGAAGCTACTTCACTACATGGGAAAAAGAAAGCCGGGGGTCATCCGTCTCTCATCAGATTCTTCGGAGGATGAAGAGGTCCGAACGCTCTCCGCAGACCGTTCCCGGTTTTCCAAGTCCAGTTCGAAACTTTTATCCTTATCGCAGAAGAAAGCTCGCGGCGGTAGACCAAAGCATGGCGGCGATACCGGTTCCTATAGTCTCCATTTCGGTGAAGCAGAAGCAAAGTTTGCCACACTCTCAGAAGAATTTTGCGACTGTCTCCATGATTTTGACTTAACGAGAGGGAATCAGCGCACAAAATATAAAGAGCTTTGGATAGATAAGTATCAACCCAATACTATTGCTGAGCTTGCGGTTCATAAGAAGAAGGCTGAAGAAGTTAAAAGTTGGTTGGAAGAAAGACTGGCCACATCAAAGGGAGGCCTTGGTAATGTGCTACTTCTAACTGGACAAGCTGGAGTTGGAAAATCTGTTGTTGTTCGTGTGATTGCATCACAACTTGGGGCTCAACTAGTTGAATGGACTACTCCTACTCCAACGTTGTGGCAAGAGCATGTACACAATGTTAATTTAGGTCTAAGGTATATGTCAAAGTTAGATGAGTTTCAAGCTTTTGTTGAGAAGATAGAAAAATATTCCTTGCTTCATTGTAGCACCGGTGGAACTTTAAGGAAACCAGATATTATTCTAATTGACGATCTCCCTGTCGCAAATGGAATTGCTGCTTTTGGTAGATTAAAAAAGTGCTTAGCTAGTCTTACTCATTCTGCTCAGATACCAATTATTATATTGATAACTGTATATCATAAAGTTGAACTTGGAGAAAATTCTGCATATCACTGCGAAGAACTTGTGTCCTTTCTAGAGGGAGTTGGAGCTCACAAGGTTGTACTCAATCCAATTACGGTAAATTCCATCAAGAAAGTTCTTTTCATGCTATGCCAAGAAGAGAAGTGTGATGTGACTTCTGAACAGATAGATCAGATAGCCAAGGCCAGTAACGGCGACATTAGAAACGCAATAACATCCTTACAGTATTACTGTCTAAGATCAGATAATTTACTCATATCCCCTGAATTAAATTGGATGGAAACCAAGGCTGAACTTGTCTCTGGCAGATCTAGCTTATCACCGGTTATGGAACTATTTGGGAAAGGAGAACTCAGTTGTAGTGCTTTTTTTTCATGTGGAAGGGATCAAACGCTTTCTCTTTTTCATGCCCTGGGAAAATTTCTCCACAATAAGAGGGTGGAGATGGATGCATCTTATATGGATTCAGAATCGCTTAATCTTAAAGAAAAATATTTGAGGAAACCACTAAAAATGGATGCTCCAGAGAAAGTTCTTTCTCAAGCTTATGGACAAGCACGGCCAATAACTGATTTTCTCCATGAGAATGTTATTGATTTTGTTAGTGATGGAGCCATCGATGATGCTTGTGTGGTGACTTCTTACTTGAGTGATGCTGATTATCTTCTGGGTTCCACTCTCCATCTATATTATCCACTGGCATTTTCCAAGATGTATGACTCACAAGGCTTATCTCATTCCGTAGCTTCATCAGTCGCAGTTCGTGGTGTTTTATTTGGAAATTCACAACCGCTATCATCAAGATGGCACACTATAAGGAGCCCAAGGCTGTGGCAAATCGAGCATTCTGCAAAGCAGTACATGCATCAGCTGCTGAATGAGAAATTTCACTTGGTGAGTTGTTTCGGTTTGTCCACTTCCCAAATAGTTACAGAGTACCAACCTGCAAGTAGCTGGATCAAAGCTCACTGTGCTGCAAATATTGATGGCAGTAAAGAAGTAGCAAAACCTTCAGTCAGAGAAACACTTTTTGCAAGCCATAACTACCCAGAATATTTAGAAGATGACGGAGAAAAGAGCGAAGAAGATGAAATTGAAGGTTGGTAACTTTGAATGTATGCTGCCTCTGAATCTGCCATGGAATTGAAAAAGAGAAGGTGCTGTTCTGTTGCTGTAAATATTGCCATTTTAATGTTATTCACAAATCTATCTGAAGTTTATTTTCTTGCTTGTTTGTTTGGTGGAACTCAGCTCTCGATTCCTCTATTGTAAATATATGCTGCCCAATAGAGGTGTTTTCTTGGAATCAGCAATGTCTTGGTTGTATAGGTTTAGAGAATGGAAGTGTGAAAGAATAGAAATTTTGTAGAATTAATCAAAAATTCAAAATAGTGAAAAATGTATTGGATCAATATTGCTCCGGTTTCTC

Network for GWHGAAEX006317

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03215.14	Rad17	97	515	5.50E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06662	HRAD17, RAD24	Cell cycle - yeast	map04111
K06662	HRAD17, RAD24	Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.770
SRP064423	SRR2545915	Juvenile tuber	11.160
SRP108465	SRR5643513	five period of Gastrodia elata	6.910
	SRR5643514	five period of Gastrodia elata	8.480
	SRR5643515	five period of Gastrodia elata	7.410
	SRR5643524	five period of Gastrodia elata	8.950
	SRR5643525	five period of Gastrodia elata	10.610
	SRR5643528	five period of Gastrodia elata	9.770
	SRR5643658	five period of Gastrodia elata	10.260
	SRR5643659	five period of Gastrodia elata	7.030
	SRR5643660	five period of Gastrodia elata	7.710
	SRR5643661	five period of Gastrodia elata	6.000
	SRR5643662	five period of Gastrodia elata	7.330
	SRR5643663	five period of Gastrodia elata	8.650
	SRR5643664	five period of Gastrodia elata	9.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.310
SRP279888	Gastro	Gastrodia elata tuber	9.39
	Juven	Juvenile tuber	10.47
	Mother_Gastro	Mother tuber of Gastrodia elata	6.78
	Mother_Juven	Mother tuber of Juvenile	8.15