Detail information of GWHGAAEX006318/evm.TU.scaffold_18.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-65 | FOG: PPR repeat |
| nr | gi|695066249|ref|XP_009380008.1| | 1.51E-176 | PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8GYM2|PP393_ARATH | 1.00E-65 | Pentatricopeptide repeat-containing protein At5g18950 |
| trEMBL | tr|F6HDK3|F6HDK3_VITVI | 2.00E-122 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB50374.1} |
| TAIR | AT5G18950 | 3.00E-65 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000015 | 2524174 | 2525997 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006318
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 245 | 303 | 6.70E-07 |
| PF13041.5 | PPR_2 | 333 | 378 | 5.30E-17 |
| PF13041.5 | PPR_2 | 403 | 450 | 1.70E-17 |
| PF12854.6 | PPR_1 | 470 | 501 | 8.20E-09 |
| PF01535.19 | PPR | 515 | 539 | 1.3 |
| PF01535.19 | PPR | 550 | 574 | 0.11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.630 |
| SRR2545915 | Juvenile tuber | 3.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.990 |
| SRR5643514 | five period of Gastrodia elata | 5.160 | |
| SRR5643515 | five period of Gastrodia elata | 7.090 | |
| SRR5643524 | five period of Gastrodia elata | 5.920 | |
| SRR5643525 | five period of Gastrodia elata | 1.510 | |
| SRR5643528 | five period of Gastrodia elata | 1.320 | |
| SRR5643658 | five period of Gastrodia elata | 0.730 | |
| SRR5643659 | five period of Gastrodia elata | 5.980 | |
| SRR5643660 | five period of Gastrodia elata | 4.170 | |
| SRR5643661 | five period of Gastrodia elata | 5.830 | |
| SRR5643662 | five period of Gastrodia elata | 4.970 | |
| SRR5643663 | five period of Gastrodia elata | 5.400 | |
| SRR5643664 | five period of Gastrodia elata | 5.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.46 |
| Juven | Juvenile tuber | 3.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.79 | |
| Mother_Juven | Mother tuber of Juvenile | 1.06 |