Detail information of GWHGAAEX006321/evm.TU.scaffold_18.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427717279|ref|YP_007065273.1| | 4.00E-178 | ribose-phosphate pyrophosphokinase [Calothrix sp. PCC 7507] |
| KOG | KOG1448 | 0 | Ribose-phosphate pyrophosphokinase |
| nr | gi|672200141|ref|XP_008777801.1| | 0 | PREDICTED: ribose-phosphate pyrophosphokinase 1-like [Phoenix dactylifera] |
| Swissprot | tr|Q9XG98|KPRS1_SPIOL | 0 | Ribose-phosphate pyrophosphokinase 1 |
| trEMBL | tr|M5WZR4|M5WZR4_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ19297.1} |
| TAIR | AT1G32380 | 0 | phosphoribosyl pyrophosphate (PRPP) synthase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000015 | 2777915 | 2800149 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006321
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13793.5 | Pribosyltran_N | 56 | 172 | 1.00E-49 |
| PF14572.5 | Pribosyl_synth | 258 | 365 | 5.10E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0044249 | Biological Process | cellular biosynthetic process |
| GO:0009165 | Biological Process | nucleotide biosynthetic process |
| GO:0009116 | Biological Process | nucleoside metabolic process |
| GO:0009156 | Biological Process | ribonucleoside monophosphate biosynthetic process |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0004749 | Molecular Function | ribose phosphate diphosphokinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 61.690 |
| SRR2545915 | Juvenile tuber | 74.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 60.250 |
| SRR5643514 | five period of Gastrodia elata | 64.450 | |
| SRR5643515 | five period of Gastrodia elata | 50.650 | |
| SRR5643524 | five period of Gastrodia elata | 51.710 | |
| SRR5643525 | five period of Gastrodia elata | 47.310 | |
| SRR5643528 | five period of Gastrodia elata | 51.150 | |
| SRR5643658 | five period of Gastrodia elata | 52.230 | |
| SRR5643659 | five period of Gastrodia elata | 46.180 | |
| SRR5643660 | five period of Gastrodia elata | 44.710 | |
| SRR5643661 | five period of Gastrodia elata | 50.810 | |
| SRR5643662 | five period of Gastrodia elata | 66.690 | |
| SRR5643663 | five period of Gastrodia elata | 61.190 | |
| SRR5643664 | five period of Gastrodia elata | 58.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 47.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 47.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 59.94 |
| Juven | Juvenile tuber | 54.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 50.65 | |
| Mother_Juven | Mother tuber of Juvenile | 41.88 |