Gene detail

Detail information of GWHGAAEX006324/evm.TU.scaffold_18.62

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0724	1.00E-90	Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains
nr	gi\|157043074\|gb\|ABV02070.1\|	1.00E-118	transcription factor 1R-MYB1 [Chimonanthus praecox]
Swissprot	tr\|Q8H0W3\|RVE6_ARATH	2.00E-90	Protein REVEILLE 6
trEMBL	tr\|A7Y230\|A7Y230_9MAGN	4.00E-119	Transcription factor 1R-MYB1 {ECO:0000313\|EMBL:ABV02070.1}
TAIR	AT5G52660	1.00E-90	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000015	2869655	2873920	-

Transcript Sequence
>GWHTAAEX006324 ATGTGCTGGCAGTTTTTGGTGCGGTCTATATATATATCTAGCGATCTCTGGCAGCGCAATTTGCTCGTGCTCGGGCATTTGCTCTTTTTACCCCATCCTCAGAGAAGAAGCAGCGCTGGTAGGCCACATCCATTTGTTGCTGGAAGCAACAAGTCCACAAGAGGGAGGAAGAGGGAGAGAGAAAGAGAGATTTTATTGTTTTTCGCAGATTGCAGCGCCCGATCTATGTTCTCTTCCACTCTGGCGGCCGGAAGCGGCTGTGGTGTGGATTTCAGTGCGGGGTCTCGTCGTCATCATCATCATCATCATCATCAGCCTGAGAAGGAGGTTCCTGCGGTTATGGCTTTCAAGGACGTGCTGAGCTCTATCACAACCTTCGCTTCAGGCGAGGAGGCTTCGCCCGAGGATCCAAACAAGAAGATCCGCAAGCCGTACACCATCACTAAATCCAGGGAGAACTGGTCCGAGCAAGAGCATGACAAGTTCCTCGAGGCTCTCCAACTCTTTGATCGTGATTGGAAGAAGATAGAAGCATTCGTTGGGTCAAAGACAGTTATCCAGATCAGAAGTCATGCGCAGAAATATTTTTTAAAAGTTCAGAAAAATGGAACAAGTGAGCATGTTCCACCCCCTCGGCCCAAACGCAAAGCTGCGCATCCGTATCCTCAGAAGGCTTCTAAAAATGGACCCCAAGTGTCTCAGCCTACAACTTCGTTTCAAGCTTCCTCGTGTCTGCCTGATCCAGGTTATACTCCAAAGTCAGGCAGGCCATCCGTGATTACAAATTCTACAAGCGGAACAATTTCTTCATGGGTCCAAGGTTCTGTACAATCCGTTGATGTGCTGCAGACAATAAAAGAGGATGCAGCCGCCCCTTCAGTGAGTAGGTTGCTTAATGTTAGCTGTAGCAGCAGCAGCATCGAAAACCCTCCAAGGACATGGCAAACTTGTGAAAGAGCTGATCAAGGGCTTCACATCGCATCTGTTCGCGCTATGCCGGACTTCGCTCAAGTGTACAGCTTTATAGGAGGCATATTTGATCCCAACAAAAGAGGCCACCTGCAGAAGTTGAAGGAAATGGATCCAATCGATGTTGAAACGGTTTTATTGCTGATGAGAAATCTGTCCGTCAATTTGGCCAATCCTGTTTTCGAGGACCATGTATGTGTATGTGTTGAAGCTCTCGATTCCTATGTTTTTTTTCTGCTCTCTAATATTTTGATTTTCCAGAGAAGGCTGCTCTCTGTGTATGATGGCGGCAGCAATAAGGGAATGCTTGAAGCTGGCGAATCTATGAAAGTCCCGACGTTCCTAGTGAAAGCCGAACATTAGAAAGAAAAATGGCCGCGTTTGTGAGTGCCTTTTTTTGAAGAGAGAAGGCTGGTTTTCTTGATAGTCGTCCTCAGAAGAAAAGAGATGCAGGAAAAGCTCTCCGCCCCATGCGCTGTATTTAAATACATTATCTCTGTTGTACAGATCTGGCCAGTTTTTTTTTTTTTAAAAATTTTGTGCTCTGAGGTCTATCCATGTAAATATTGAGTTGCTCTAAAGATTAAAAGAATAAAGTTAAGATTATATGATTCTGATGTTTTATAATGCTTTCTTGCTCTTGTTTTTCGGTCGGGGCTTTTACTTGCTACCATTTTTTCCTCAGC

Network for GWHGAAEX006324

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	151	195	8.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.510
SRP064423	SRR2545915	Juvenile tuber	27.560
SRP108465	SRR5643513	five period of Gastrodia elata	11.490
	SRR5643514	five period of Gastrodia elata	13.140
	SRR5643515	five period of Gastrodia elata	17.730
	SRR5643524	five period of Gastrodia elata	13.830
	SRR5643525	five period of Gastrodia elata	37.610
	SRR5643528	five period of Gastrodia elata	19.870
	SRR5643658	five period of Gastrodia elata	45.370
	SRR5643659	five period of Gastrodia elata	14.880
	SRR5643660	five period of Gastrodia elata	17.060
	SRR5643661	five period of Gastrodia elata	15.380
	SRR5643662	five period of Gastrodia elata	11.740
	SRR5643663	five period of Gastrodia elata	14.360
	SRR5643664	five period of Gastrodia elata	26.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.040
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.040
SRP279888	Gastro	Gastrodia elata tuber	21.87
	Juven	Juvenile tuber	6.37
	Mother_Gastro	Mother tuber of Gastrodia elata	20.41
	Mother_Juven	Mother tuber of Juvenile	9.95