Gene detail

Detail information of GWHGAAEX006325/evm.TU.scaffold_18.64

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383761353\|ref\|YP_005440335.1\|	1.00E-76	50S ribosomal protein L5 [Caldilinea aerophila DSM 14535 = NBRC 104270]
KOG	KOG0398	3.00E-98	Mitochondrial/chloroplast ribosomal protein L5/L7
nr	gi\|743777368\|ref\|XP_010919114.1\|	7.60E-112	PREDICTED: 50S ribosomal protein L5, chloroplastic [Elaeis guineensis]
Swissprot	tr\|O04603\|RK5_ARATH	9.00E-99	50S ribosomal protein L5, chloroplastic (Precursor)
trEMBL	tr\|M0T055\|M0T055_MUSAM	4.00E-112	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P20260_001}
TAIR	AT4G01310	3.00E-98	Ribosomal L5P family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000015	2935784	2965576	-

Transcript Sequence
>GWHTAAEX006325 AACAACAATAAATACCAAGTAGAAAGCAAATTGCAGTCTTACCGAGAGAGTTACATGCCATGGCCTGCATATAAGATTAATGGTAGCAGCAGTCCAAAAGCTGAAAATACCAATACAGAATCATTATTCTTGAGAGGCTTATGCAACAGCAATAACAAGAAATTTTTATAAAGGTTATTGTTTTTAAATTGATGAGAGCTTGCTTCTGCTGTCCTGCACATGATCCACCACTGGCCCCTGGATAGAATCGCAGAAGACGGCCTTCATGGCCACCGCTATGACCCTCTCCCTCTCCTCTTCTTTTTCCCCGTCGTTTTCCTCTCACTACCCAACCTGTCTTCTAACCCATTTCTACTTTAATAGTCAGAAGCCAAGGCGCCGGACCCTGATAACTAGGGCTTCCATATCCGCCGCCCCCACACCCATTACTACTCCGACAACATCTTCTTCTGGAATCGTGCTCGTATACAAGTTGGATTCTGACAAGGTGAATCGTCTCAAATTGCATTATCTCGAGAAGATTGTTCCAATTCTGAAAGAGGAATTCGGCTACAAGAATATCCATGAGGTTCCTCGAATAGAGAAGATTGTAGTAAACTGTGGCATAGGAGACGCTGTACAGAACTCAAAAGGTTTGGAGGCTGCGATGAAAAATCTTTCACTGATAACGGGACAGAAACCAGTGCAAGCAAAGGCTAAGCGCTCTATTGCAAGTTTCAAGCTCAGAGAAGGGTCCACGGTGGGAATTTTTGTTACTCTTCGGAGAAATGTGATGTATTGTTTCCTTGACCGTTTGATCAACCTGGGGCTTCCCAGGACAAGGGATTTTCAGGGAGTCAGCCCTGACAGTTTTGATGGGCATGGAAACTACAACCTAGGCATGCGTGACCAGAGCGTCTTCCCTGAGATTAAATATGAAGCCTTAGGAAAGAGCAGAGGCATGGATGTTTGTATCACCACGTCTGCAAAGACAGATGCAGAGGCCCACAGATTACTCGCCCTTCTAGGCATGCCCTTTAATTCTGTAAAAGGAGGTCCCAAGCTCCACCAAAAAAATAGGAAGAAAAAGATAATGAAGAAGAAGACACCTCAGTCTGATCCAAAGCCTAAATGATGCGAATAAGGATTTATTCTTGTCCGCAGGCTATTTGTCCTCCTCATCCAAGACCTTGCCTATCGGTTGCATCACCTGCGACCGGATTTTGATGAAAACTGGTGCATGTTTTCATGTCCATCCTCAAAATTAAGCTCATTTATTAAATTGCTGGAGGGATGGATCCTGCATGTAATGCAGGTACTACAGGAAGAGCAAGACTTTTTAAAGAAAAAGAATACTGATGAAAAGTCAAATGAAATATTTAGTTTATTTATTTTTAATGCGAAGCAATTTTCATCATATATGAAAGTCATGTAAAATTGTATATTATGCAAATTTTAGTTTCGAATTGAATGGAATGGTATTTTCTTTTTGAATGACTGAAATGATGTTGACATTTTATCCTACTTAATCATCCAAATAGGGTCTTGCAG

Network for GWHGAAEX006325

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00281.18	Ribosomal_L5	98	154	5.90E-26
PF00673.20	Ribosomal_L5_C	159	251	2.70E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02931	RP-L5, MRPL5, rplE	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	Biological Process	translation
GO:0003735	Molecular Function	structural constituent of ribosome
GO:0005840	Cellular Component	ribosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.210
SRP064423	SRR2545915	Juvenile tuber	8.720
SRP108465	SRR5643513	five period of Gastrodia elata	10.660
	SRR5643514	five period of Gastrodia elata	11.400
	SRR5643515	five period of Gastrodia elata	9.830
	SRR5643524	five period of Gastrodia elata	10.880
	SRR5643525	five period of Gastrodia elata	11.030
	SRR5643528	five period of Gastrodia elata	10.920
	SRR5643658	five period of Gastrodia elata	14.280
	SRR5643659	five period of Gastrodia elata	9.500
	SRR5643660	five period of Gastrodia elata	11.680
	SRR5643661	five period of Gastrodia elata	12.480
	SRR5643662	five period of Gastrodia elata	12.680
	SRR5643663	five period of Gastrodia elata	12.780
	SRR5643664	five period of Gastrodia elata	12.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.510
SRP279888	Gastro	Gastrodia elata tuber	11.30
	Juven	Juvenile tuber	13.05
	Mother_Gastro	Mother tuber of Gastrodia elata	9.83
	Mother_Juven	Mother tuber of Juvenile	9.54