Detail information of GWHGAAEX006333/evm.TU.scaffold_18.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|377809761|ref|YP_005004982.1| | 3.00E-18 | ribonuclease III [Pediococcus claussenii ATCC BAA-344] |
| KOG | KOG0701 | 0 | dsRNA-specific nuclease Dicer and related ribonucleases |
| nr | gi|672120545|ref|XP_008783544.1| | 0 | PREDICTED: endoribonuclease Dicer homolog 1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q8LMR2|DCL1_ORYSJ | 0 | Endoribonuclease Dicer homolog 1 |
| trEMBL | tr|A0A088SQF0|A0A088SQF0_COCNU | 0 | Putative endoribonuclease dicer-like protein 1 {ECO:0000313|EMBL:AIO05700.1} (Fragment) |
| TAIR | AT1G01040 | 0 | dicer-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000015 | 4289464 | 4340527 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006333
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04851.14 | ResIII | 258 | 427 | 3.90E-13 |
| PF00271.30 | Helicase_C | 661 | 778 | 2.60E-17 |
| PF03368.13 | Dicer_dimer | 853 | 941 | 1.00E-21 |
| PF02170.21 | PAZ | 1219 | 1354 | 1.70E-22 |
| PF00636.25 | Ribonuclease_3 | 1391 | 1539 | 3.60E-30 |
| PF00636.25 | Ribonuclease_3 | 1614 | 1726 | 4.40E-24 |
| PF14709.6 | DND1_DSRM | 1847 | 1920 | 2.20E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004525 | Molecular Function | ribonuclease III activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0016891 | Molecular Function | endoribonuclease activity, producing 5'-phosphomonoesters |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 79.110 |
| SRR2545915 | Juvenile tuber | 40.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.540 |
| SRR5643514 | five period of Gastrodia elata | 14.230 | |
| SRR5643515 | five period of Gastrodia elata | 12.480 | |
| SRR5643524 | five period of Gastrodia elata | 13.340 | |
| SRR5643525 | five period of Gastrodia elata | 19.570 | |
| SRR5643528 | five period of Gastrodia elata | 12.860 | |
| SRR5643658 | five period of Gastrodia elata | 21.550 | |
| SRR5643659 | five period of Gastrodia elata | 20.910 | |
| SRR5643660 | five period of Gastrodia elata | 23.820 | |
| SRR5643661 | five period of Gastrodia elata | 18.620 | |
| SRR5643662 | five period of Gastrodia elata | 19.340 | |
| SRR5643663 | five period of Gastrodia elata | 20.470 | |
| SRR5643664 | five period of Gastrodia elata | 24.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.65 |
| Juven | Juvenile tuber | 51.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.83 | |
| Mother_Juven | Mother tuber of Juvenile | 44.06 |