Gene detail

Detail information of GWHGAAEX006335/evm.TU.scaffold_18.88

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0724	5.00E-32	Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains
nr	gi\|222423124\|dbj\|BAH19541.1\|	4.22E-37	AT1G01060 [Arabidopsis thaliana]
Swissprot	tr\|P92973\|CCA1_ARATH	2.00E-32	Protein CCA1
trEMBL	tr\|A0A022REQ0\|A0A022REQ0_ERYGU	4.00E-34	Uncharacterized protein {ECO:0000313\|EMBL:EYU38862.1}
TAIR	AT2G46830	5.00E-32	circadian clock associated 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000015	4637232	4680378	+

Transcript Sequence
>GWHTAAEX006335 GGGGGAATACAGAACCAATTAAATTCGCGCAAGAGGGAGGGACAAACGGGTAGGCAAGGATAGAGGAGGGGCTCGCAATCCCTGCGCGTATCGCTACCACGATTAAAATCGCTTTAGCGTGAGCCCCACTTGGAGCCACTACAATGCCGCCACATGGAACGATTTTCCTTTCATTAACCGCCTCAGAATTGATCTCGAATCCGGCCCTGCCTTCCCCCACCATCCTTCAACCAAAAAGTTGTGGCTCAGATTCCTCCTGGCCTAATCTTCAGGTTTGCTGCCTCACTGTGAAGAGAGGGTTGGGGTGGAAATGCGATGATAGAGGAAGAGAGAGTGAGATTTTTGGAGTTAGGCATGCCGAATCGACAGCTCCCTTCGCCTGCCATTACAGCCTCCATGAATCTACTTGTCTATAAACAAATGACAGATTGGAGGGCTGATGTAGTTAGGTATGCGCTTGTTGCTAATTTCGTGAGACGAAGACCAAGGGAGGAGGCGAATAAATACTCAAGAAGAGGACTGCGACTGCCAGAGTTCCTGTTTCTAGGGCTAGAAACCACCGCCCCTTTAGTTTATCTCGCATTCATTGCGAAGGACTCACTGAAGAGATGAGTTACCATACCTCTCAGTCTGGATCAGGCTGGAGCATTTTGTCCATTTCTTACTTAGATTGAGATCCGACCGATTGGATAAGCGTCTTTGTGAAGTTTGGGAATCAGTGCTGGGAATGAGTCCCGTGAGGGAGCTGACAAAGACAAGGAAGCCTTACACCATTACAAAGCAGCGGGAGAAGTGGACGGATGAGGAGCACAGCAGGTTTTTGGAAGCACTCAGGCTGCACGGCCGAGCATGGCAGCGTATTCAAGAGCATATTGGTTCAAAAACTGCTGTTCAGATACGAAGTCATGCCCAGAAGTTTTTTCTTAAGCTGGAGAGAGGCACAGGCATGTCGCCCGGACATCCCAAGGGCATAGAAATTCCTCCCCCGAGGCCTAAAAGGAAACCATACAGCTCATATCCTCGAAAGACCGACGCTTCTCTGAGAAGCCAATCTGAGGAAGTCAAAGAGAACAACTACTCAAAAGCATCTGTTCTGCTGGGCGCCGATACACTTGGACTCGATACGATGATCAAGAAATCAAGGAAAGCCTCAGTAGAACAACAGAACACGAAGCAAGGGTTTGGAGAAGGCACCTCATCGACTTCCAACTATCTTCACCACATCTGCTCTTCCGAACGTTCCCAACATAATAAGCCGGCAGTGGAATATTTGAAAGAGCCTCGGAGCAAAATGGCAGAGGAAAATCTTACAGATTCTTGGCTCGGATTCGCTGAAGAACCCAAGTCACGGCAGGCTGCAAGGAACCAAAGCCATGAGGAATTTGAAGGAGCCAAAGCGAATGCGGATCTGAATCTATCGCCGGATTGCACGAGAACGGCGACGCACAACAGACTGAGAAACTCATCGATGTCTTCCGTCCACCAGGAGCTTCCTTCCTTCTTGCTTCATAAAGGCGACAGCAGTTCATTCAGCCCGAGCGTGAGCTTGATAAACTACTTTCCGAGTCTCCTGGGGTCCGCCCTGTCGCAGAATCCGGCCATTCATCAGGCTGCGTGCGTCGCGGCAGCTCTGCTTCCGCCAGGCTACGCAGATTTTTCCGGCCTTGAAGCTGCTCAGAACCAACAGTCGAGCGTTTCCGCCATTATCACAGCCACGATCGCAGCTGCAAGCGCCTGGTGGAAGGTTCACGGCCTGCTTCCGTCTCCGTTGCAGCCGCAATCAGCCGAGTCGCCCCGAGCTCAGGAAGACATCAGCAGCAAAGAAATTCATCACAAGCGATTTTCTTCTGAAATCCGCGAGACGAGCCGAACGAGGCATCAGCAATTCTGCTCTGCGCTGCTGGAGCTGTCTTCGTCTCCAGATACCTGCGAGAGGGCCCCAAATTCCGCCGCGAATCATGCGCCGGCCAGCAGCAAGAAGAAGCACGACCCCTCCTCCTGCGATTCCAACACATCTCCCAGCTGCGAGGCCGACACGGATGCCGCCCCCAACCGCCAATCAAACCCCAAGCACAAAAAGGGCTCTCTCACATTCCAAGCCATGGGCCTTCGGTTCGACCTCAATTGCAGCGGCGTCAACGCCTGATCGGCGGACAACGATGCAGCCGGACAAGAAGAGAGCAATAATAGAATGTCTTGTTTTTAAGTGTGCTTTGAACTGGACAAAGCTACGCTGCCCTCCAACCTTTTTCTTGCCTTCCCCTCCTATAGAAACCATTTTTTTATTGATTCCAATCAATAGCTTGAATTGGAATTTTCTATATTTCAAGGTCTAATAAATCATGGAAGTGATGACTCAAGATTCTTTTATTTTTTAATTTGGAGGAGAGATGGTTGATTTATTATGTTCATACCGATCATTTAAATATCATTAATAACGGATCTTTGCCTGC

Network for GWHGAAEX006335

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	20	63	7.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
K12133	LHY	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.410
SRP064423	SRR2545915	Juvenile tuber	4.760
SRP108465	SRR5643513	five period of Gastrodia elata	4.870
	SRR5643514	five period of Gastrodia elata	3.700
	SRR5643515	five period of Gastrodia elata	3.480
	SRR5643524	five period of Gastrodia elata	3.180
	SRR5643525	five period of Gastrodia elata	4.340
	SRR5643528	five period of Gastrodia elata	3.960
	SRR5643658	five period of Gastrodia elata	4.310
	SRR5643659	five period of Gastrodia elata	4.220
	SRR5643660	five period of Gastrodia elata	4.840
	SRR5643661	five period of Gastrodia elata	5.410
	SRR5643662	five period of Gastrodia elata	5.410
	SRR5643663	five period of Gastrodia elata	4.200
	SRR5643664	five period of Gastrodia elata	6.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.450
SRP279888	Gastro	Gastrodia elata tuber	7.60
	Juven	Juvenile tuber	9.83
	Mother_Gastro	Mother tuber of Gastrodia elata	5.87
	Mother_Juven	Mother tuber of Juvenile	7.31