Detail information of GWHGAAEX006343/evm.TU.scaffold_18.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15668420|ref|NP_247216.1| | 2.00E-15 | 30S ribosomal protein S17e [Methanocaldococcus jannaschii DSM 2661] |
| KOG | KOG0187 | 3.00E-70 | 40S ribosomal protein S17 |
| nr | gi|672120566|ref|XP_008783554.1| | 3.28E-79 | PREDICTED: 40S ribosomal protein S17-like [Phoenix dactylifera] |
| Swissprot | tr|P49215|RS17_SOLLC | 6.00E-73 | 40S ribosomal protein S17 |
| trEMBL | tr|M0RVY9|M0RVY9_MUSAM | 7.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P00810_001} |
| TAIR | AT5G04800 | 3.00E-70 | Ribosomal S17 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000015 | 6926185 | 6933888 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006343
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00833.17 | Ribosomal_S17e | 1 | 117 | 1.30E-58 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02962 | RP-S17e, RPS17 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 102.780 |
| SRR2545915 | Juvenile tuber | 135.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 191.550 |
| SRR5643514 | five period of Gastrodia elata | 203.010 | |
| SRR5643515 | five period of Gastrodia elata | 195.980 | |
| SRR5643524 | five period of Gastrodia elata | 194.110 | |
| SRR5643525 | five period of Gastrodia elata | 104.670 | |
| SRR5643528 | five period of Gastrodia elata | 153.470 | |
| SRR5643658 | five period of Gastrodia elata | 87.140 | |
| SRR5643659 | five period of Gastrodia elata | 242.850 | |
| SRR5643660 | five period of Gastrodia elata | 235.790 | |
| SRR5643661 | five period of Gastrodia elata | 274.720 | |
| SRR5643662 | five period of Gastrodia elata | 232.830 | |
| SRR5643663 | five period of Gastrodia elata | 229.990 | |
| SRR5643664 | five period of Gastrodia elata | 187.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 183.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 78.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 225.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 178.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 169.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 137.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 183.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 190.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 267.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 219.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 285.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 285.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 131.53 |
| Juven | Juvenile tuber | 92.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 66.58 | |
| Mother_Juven | Mother tuber of Juvenile | 57.31 |