Detail information of GWHGAAEX006356/evm.TU.scaffold_180.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|14521559|ref|NP_127035.1|4.00E-59cell division control protein [Pyrococcus abyssi GE5]
KOGKOG07380AAA+-type ATPase
nrgi|672138468|ref|XP_008792994.1|0PREDICTED: katanin p60 ATPase-containing subunit A-like 2 isoform X1 [Phoenix dactylifera]
Swissprottr|Q9SEX2|KTNA1_ARATH1.00E-92Katanin p60 ATPase-containing subunit A1 {ECO:0000255|HAMAP-Rule:MF_03023}
trEMBLtr|M0TKL6|M0TKL6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P25300_001}
TAIRAT2G345600P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000181124157171436+
Transcript Sequence

Network for GWHGAAEX006356

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.28AAA1552854.70E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms47.490
SRR2545915Juvenile tuber54.200
SRP108465SRR5643513five period of Gastrodia elata39.790
SRR5643514five period of Gastrodia elata48.610
SRR5643515five period of Gastrodia elata42.750
SRR5643524five period of Gastrodia elata45.010
SRR5643525five period of Gastrodia elata35.900
SRR5643528five period of Gastrodia elata31.390
SRR5643658five period of Gastrodia elata40.520
SRR5643659five period of Gastrodia elata34.520
SRR5643660five period of Gastrodia elata33.890
SRR5643661five period of Gastrodia elata35.310
SRR5643662five period of Gastrodia elata40.090
SRR5643663five period of Gastrodia elata47.660
SRR5643664five period of Gastrodia elata44.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.380
SRR6049655Rhizomagastrodiae_C368-T10_good_145.190
SRR6049656Rhizomagastrodiae_C368-T07_good_141.030
SRR6049657Rhizomagastrodiae_C368-T07_good_140.230
SRR6049658Rhizomagastrodiae_C368-T04_good_133.040
SRR6049659Rhizomagastrodiae_C368-T04_good_136.370
SRR6049660Rhizomagastrodiae_C368-T01_good_138.180
SRR6049661Rhizomagastrodiae_C368-T04_good_127.290
SRR6049662Rhizomagastrodiae_C368-T01_good_132.650
SRR6049663Rhizomagastrodiae_C368-T01_good_132.300
SRR6049664Rhizomagastrodiae_C368-T10_good_133.020
SRR6049665Rhizomagastrodiae_C368-T10_good_133.020
SRP279888GastroGastrodia elata tuber 38.51
JuvenJuvenile tuber39.12
Mother_GastroMother tuber of Gastrodia elata 19.65
Mother_JuvenMother tuber of Juvenile 26.50