Gene detail

Detail information of GWHGAAEX006359/evm.TU.scaffold_180.12

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2068	3.00E-88	MOT2 transcription factor
nr	gi\|743770512\|ref\|XP_010915539.1\|	1.80E-91	PREDICTED: uncharacterized protein LOC105040626 isoform X4 [Elaeis guineensis]
trEMBL	tr\|S8EAI8\|S8EAI8_9LAMI	3.00E-88	Uncharacterized protein {ECO:0000313\|EMBL:EPS69542.1} (Fragment)
TAIR	AT3G45630_1	3.00E-88	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000181	209325	245113	+

Transcript Sequence
>GWHTAAEX006359 AGCCAACTAAAAACGCCACGTGGCTTGGGTCACATGCTCACATCAACCCTATCGATCTATATTTTCCATGAAAACGGCCGGCTCGGTAGCTGGCGGACGAGAAGCGAGAGGGGTGCAAACTCACCATTAATGGAAGCAAGACTCTGAGTGATACCACTCGCGTCAGAAAGCCATCGGTGCCAGTTTCTTGAAAAAGCTAGCAAAATGGGTGGTAAACGGGAAGGTATCTGCCCTATGTGCCTGGAGGAAATGGACTTAACTGATCGAGAGTTGCAGCCTTGCATATGTGGATATGAGATATGTTTGTGGTGTTGGCATTGCATAATTCAAACCGCTACAAAGGCTGGTGGCAATGCACAGTGCCCCTCATGCCATAGCTCTTATGATAAGGAGAAGATTTTGAAGAGGACAATTAGCAAAGAAAGATTAGAGATGGTAAATGTGAACAAGAAGCATAAGCTGCAAAAGATTAAGCCTAGACTGCCAGATGTTGGGAAGGATCTTAACAGCATTCGTGTGATAAGGCGAAACATTGTATATATTGCTGGGATTCCTAAAATTTTAGCAAATGAAACGACCCTTAGGAAGAAAGATTACCTGGGACAGTATGGAAGGATTGTTAAGATTTTTTTTGCACAAACGGACGTATCCCGCCAGCATTATTCTTCAGACTCTTGCATAGTATACGCTACTTTTTCAAAAAAGGAGGAAGCTCTTCGCTGTATTCAAGCTGTAAATGGATTTATTTTAGATGGTAGGCCTTTGAAGGCAAGCTTTGGCACCACAAGATATTGCCATTCATGGTTGAATAATGTTCCTTGTAAGAATCCGGACTGTTTATACGTGCATGAAGTTGTTTCAGAAGAAGATATTTGCTTAAGAGAAGAAGTTATTCCATTTTGTACAGGTAAACTTCAACAATGCCCTGGCCTTACAACATCTAATCTTAAACAACATTCAGGAAGTTTCTTACCGCCGCCGCTAGACTCGAAGAATGTATCACCCCCATTGGATCTTATTAATAGTCATAGGCATATGCAAAGTGATTATTTTAAGAGGTCATATGCTAGTGTTGCCGCTTCGCATAATCTATCAAAGATTTCTAGCATGAATGACAATCTAAGCTCCAAGCATTCCAGTCAGGTAGACATTTGCTTTCCAGCAAATTCATGGGAACATATCCCTGTTAGCCGTGAGGTTCCTACATCAGGAAATGAAATCGCTCATCCTAAACAAGACATTGATTATGTTGCGGATGCAAAATATTTTGTTGGGTTTAGCTGTTCAGAATACTCTCGTTCACCTAATCCTGTGGCAGATGGTAACACTCACAGACTTTCATTTCAAGGGGATTACATATCTGAGAGATTTATAGAAGAACCATTCTTTCTTCATTCTGACAGCCAGTTTACATCTAGTTCAGCAAATGCAATGACAGTTGCTTCTGCTGACTGCTTTAATCCTTTTAGTAATATAAACACACAAAAGTGTGAATCAGTGGAAAGTATTTCCAAAGAGTTTTCTTCAAAATGGGATAATCTTAGCGCTGTTTCCAGAAAATGTGAATCCTTTTCATGGTTCCAAACATTACCTGGTGACCCTACATTGCAAAAGGATGATCTTTCGTTATATGATCTATCTAGGCTGCATTCAGATTTAGGATCTAAAAAACTCAACTGCAGCCTTGAAGATGAAGAATTTTTTGGAATAAAATCGAAGGATTTTTCTTCTTTATCAAGAAATCTCAGAAACTTGCACTACAAACTTGATAAACCTTCAGCAATTTTGGCTACAAATCCTATGCAGTTTGATGATGAACAGAAAAAAATAGCTGACAATTCTTCTAGTTATGGTGTTCAGAGATTCATTTATTCCAATAATGTCATGACTAAGGATCAAAATTTTTTGAATGAATCCTATAGAGAGCAATGCGATGATAGGATTTTATCAGATATTTTGGCTCTTGATCTTGATGCAATTGTTAAATTAGATGATACACAATCTGTTTTAGGACACCTTGGAAGCTCTGATGACATGTCAAGAATTCCAAACACTTGGTTTTCATCTACTAGTGATGTTTCAAAATCTTATTTTTCAATGACGGATGATTTGCTTACTCCTTTTGGGAATTTATCCCCAATGTCTATAGATGCTTCTTGTTCAACTAATAACTCATCTTCATTTGAAATCATGCTAAATAAAGAAGAATATATTGAGGATTTGACAAGCAAGTGTGATTTTGAAGCATCAAAGGATTCTAAGATTCTTGGCATATCTGGTATTCTTCCTGTTGGTGCAGTTCGCCATTCTCAAAGTTTATTGGGAATGGATCATTCAGGTTATTTTGTTGCTCAGGATAAATCTCAGCATCAGTATCCAAATTGCACCAGAAGAACTATGCTTTTAACCCCTCCTGGCTTCCCACCAAAGAAACCCGGACAAGGTGCAAGCAACGCTGCACAAGGCCACTTGCCACGCAAGTCTCTGTCTAACATGACTGCTGCCGCCATGACAACCTCAGTTAACATGTATACTGATACGATAGATGATAGCACGCCATATTCTGCTAATCTAGAAGTATCATTGGGTGACGATTCCCACAGAGCCAACCCACCACCACTTCCTCTATTTTTGCCACATATGGTCTCATCATCAAGGAAAGTAGTCAACCCTGTTAGTTCCAATTCTCTCAACAGTTTCGATTGGTGTAGTTCCTGAATTTAAATCCAGGCAGCATCATGCGCCTTCTTTCTTTTTAAAGAAGAAAAAAAAAATACATAGCACGTCGATTTACCCCTTGTTAAAAAGAAAGGATGCCTCAATACGAAGATAGAAATGCTAATCTTTCCCTCATTTTATTATTCTATTCATGGATCGATTTCTAACTTCAGCTGGTTTCAATGAAAAATTCTTTTTGTTGATCTGCCAATGTGTTCATACTGCATACTATGACATTTGTAAAAGAGAAATTATCTTTTTTTTTCTTAACAAGTTGAATGGGTGAAGTGATTAAGGTTTGTTTATTGTTGTAGTAGGTGTTTTTTATTTCCAATAT

Network for GWHGAAEX006359

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14570.5	zf-RING_4	9	61	6.40E-16

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K10643	CNOT4, NOT4, MOT2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.130
SRP064423	SRR2545915	Juvenile tuber	2.430
SRP108465	SRR5643513	five period of Gastrodia elata	1.480
	SRR5643514	five period of Gastrodia elata	1.680
	SRR5643515	five period of Gastrodia elata	0.950
	SRR5643524	five period of Gastrodia elata	1.580
	SRR5643525	five period of Gastrodia elata	0.920
	SRR5643528	five period of Gastrodia elata	1.100
	SRR5643658	five period of Gastrodia elata	1.390
	SRR5643659	five period of Gastrodia elata	0.450
	SRR5643660	five period of Gastrodia elata	0.440
	SRR5643661	five period of Gastrodia elata	0.360
	SRR5643662	five period of Gastrodia elata	0.370
	SRR5643663	five period of Gastrodia elata	0.220
	SRR5643664	five period of Gastrodia elata	0.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.040
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.040
SRP279888	Gastro	Gastrodia elata tuber	0.71
	Juven	Juvenile tuber	2.09
	Mother_Gastro	Mother tuber of Gastrodia elata	1.10
	Mother_Juven	Mother tuber of Juvenile	2.00