Detail information of GWHGAAEX006360/evm.TU.scaffold_180.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0118 | 2.00E-121 | FOG: RRM domain |
| nr | gi|672106828|ref|XP_008779762.1| | 1.87E-168 | PREDICTED: polyadenylate-binding protein-interacting protein 11-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9LRR6|CID9_ARATH | 6.00E-122 | Polyadenylate-binding protein-interacting protein 9 |
| trEMBL | tr|M0T4F9|M0T4F9_MUSAM | 7.00E-155 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P05610_001} |
| trEMBL | tr|M0T4F9|M0T4F9_MUSAM | 7.00E-11 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P05610_001} |
| TAIR | AT3G14450 | 2.00E-121 | CTC-interacting domain 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000181 | 310023 | 322774 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006360
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07145.14 | PAM2 | 41 | 53 | 6.60E-05 |
| PF00076.21 | RRM_1 | 137 | 199 | 8.30E-13 |
| PF00076.21 | RRM_1 | 234 | 301 | 2.50E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 65.030 |
| SRR2545915 | Juvenile tuber | 62.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 89.670 |
| SRR5643514 | five period of Gastrodia elata | 75.090 | |
| SRR5643515 | five period of Gastrodia elata | 61.100 | |
| SRR5643524 | five period of Gastrodia elata | 72.300 | |
| SRR5643525 | five period of Gastrodia elata | 56.000 | |
| SRR5643528 | five period of Gastrodia elata | 51.740 | |
| SRR5643658 | five period of Gastrodia elata | 52.520 | |
| SRR5643659 | five period of Gastrodia elata | 82.800 | |
| SRR5643660 | five period of Gastrodia elata | 69.850 | |
| SRR5643661 | five period of Gastrodia elata | 71.030 | |
| SRR5643662 | five period of Gastrodia elata | 68.970 | |
| SRR5643663 | five period of Gastrodia elata | 70.400 | |
| SRR5643664 | five period of Gastrodia elata | 73.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 89.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 85.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 99.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 90.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 100.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 99.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 95.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 90.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 78.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 82.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 101.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 101.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 92.35 |
| Juven | Juvenile tuber | 109.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.67 | |
| Mother_Juven | Mother tuber of Juvenile | 77.39 |