Detail information of GWHGAAEX006367/evm.TU.scaffold_180.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428317752|ref|YP_007115634.1| | 7.00E-27 | WD-40 repeat-containing protein [Oscillatoria nigro-viridis PCC 7112] |
| KOG | KOG0277 | 0 | Peroxisomal targeting signal type 2 receptor |
| nr | gi|672106816|ref|XP_008813497.1| | 0 | PREDICTED: peroxisome biogenesis protein 7 [Phoenix dactylifera] |
| Swissprot | tr|Q9XF57|PEX7_ARATH | 0 | Peroxisome biogenesis protein 7 |
| trEMBL | tr|M0T6Z9|M0T6Z9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P14510_001} |
| TAIR | AT1G29260 | 0 | peroxin 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000181 | 393785 | 394738 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006367
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 53 | 88 | 0.005 |
| PF00400.31 | WD40 | 96 | 133 | 0.008 |
| PF00400.31 | WD40 | 141 | 177 | 0.00084 |
| PF00400.31 | WD40 | 188 | 220 | 0.00036 |
| PF00400.31 | WD40 | 226 | 264 | 0.0012 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13341 | PEX7, PTS2R | Peroxisome | map04146 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.170 |
| SRR2545915 | Juvenile tuber | 11.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.090 |
| SRR5643514 | five period of Gastrodia elata | 16.580 | |
| SRR5643515 | five period of Gastrodia elata | 14.530 | |
| SRR5643524 | five period of Gastrodia elata | 16.270 | |
| SRR5643525 | five period of Gastrodia elata | 20.430 | |
| SRR5643528 | five period of Gastrodia elata | 18.880 | |
| SRR5643658 | five period of Gastrodia elata | 19.690 | |
| SRR5643659 | five period of Gastrodia elata | 19.190 | |
| SRR5643660 | five period of Gastrodia elata | 19.000 | |
| SRR5643661 | five period of Gastrodia elata | 23.040 | |
| SRR5643662 | five period of Gastrodia elata | 24.630 | |
| SRR5643663 | five period of Gastrodia elata | 19.690 | |
| SRR5643664 | five period of Gastrodia elata | 21.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.98 |
| Juven | Juvenile tuber | 17.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.29 | |
| Mother_Juven | Mother tuber of Juvenile | 21.95 |