Gene detail

Detail information of GWHGAAEX006378/evm.TU.scaffold_180.33

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|319952435\|ref\|YP_004163702.1\|	6.00E-08	hypothetical protein [Cellulophaga algicola DSM 14237]
nr	gi\|743799837\|ref\|XP_010925621.1\|	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Elaeis guineensis]
Swissprot	tr\|C0LGK9\|Y2242_ARATH	9.00E-79	Probable LRR receptor-like serine/threonine-protein kinase At2g24230 (Precursor)
trEMBL	tr\|B7F9F7\|B7F9F7_ORYSJ	4.00E-168	cDNA, clone: J075193C19, full insert sequence {ECO:0000313\|EMBL:BAH01255.1}
TAIR	AT5G45800	1.00E-143	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000181	614823	618300	+

Transcript Sequence
>GWHTAAEX006378 AAAAAAAAAAAAAAAAATTATTATGGAAGATGGTTAGAAAAGTGCTAAAGAACTATAAATCACCCATAGTTTTACCGCTCACCTAATTCGCGTCCCAGTGAGCTTCTTACTCCTAAACCAACGCAGCAGCTCCCCTCCTCCTCCTCCTCCAATTAATAAACCTGCTCCCCGACCATTTCCGCAATCAGAGGCGTCCATCAATTCTTCCATCCGCCGACAGTTAATGCGTTCGATCCTTTTCCAGCGCGCCAGAGCAGAGAGCCTCTTCGCCTCCAAGCCATGGCGCCCCTCCTCCTCCTCCTCCTTCTCATGTCCTTCTTAACTGCGACTCACTGTTCCTGCGACCCATCGCAGAGCCATATCCTGTCCCTCGCATTCTCCTCCGTCTCGGGATTCCAGCCGCCACAGCAGCCCGCCGGCGGCGGCGGCTGCATCCGCCGCGTCCATCTCCCATCCCAGAACCTTTCCGGGAGCGTATCCTGGTCGTTCCTGCGGAACATCACAACTCTGGAATCGTTGGATCTGTCCGGCAACGCGCTGGAGGGATCGATCTCGGGAAGCTTCTGGACGTCCCCTGCGCTCACCGAGCTGAACCTCGCCTCCAACCGCTTGGGCGGACCGCTCCGGTTCGAGCGGTCCAAACTCCGGTTCCTCAATCTCTCCGGAAACCGGTTCACCGCTGCGTCCAACCTCCGGCGGCTCCCCTGCCTGAGAATCCTCGACTTATCGAGAAACAAGCTGGGGTTCACCCCGCAGGGCATGAGATCCCTCCCGAATATTCAATACTTAGACCTGTCGGGTAACTCCATGGAAGGGGAATTTCCAAGGGATTTTCCGGCTATCGCCAGACTTCGCTTTCTGAACGTGGCTCGCAACAATCTCTCCGGCGAGGTTAACTCCGAGGTGCTGGGAAAGTTTGGAAGCTCTGCTTTTGCCAAAGGCGGGGTTTTTACCTACGCCGAGGAAGCTCGCGGGGACAAAAATAAGGAGAGGAAGAAGGGGAAGAGGAGGAAAGCGGTGATAACGGCGGCAGCGGCTGCGGCGGGTGGAGTGGTGATTGTCGGTGCGGTGATCGCCGGAGTTGCACTGTTTCGGAGAAAGAGGTCGCCGGAAAAGGAGGCAGCGGAGGAGGAAGAGGAGGGGTGGGTGAGGGAAGCGAAGCTGGGAGCGGCCGTGGTGCTGTTCGAAAAGCCATTGATGGAGCTCACCTTCGGGGATTTGGCTGAGGCGACTTCGGGATTTGGCAGAGAGTCGCTAATGGCGGAAGGCGGAAGGGGTGGGCCCATTTACAGGGCTGTGTTGCCGGGAGAGATGCACGTAGCTGTCAGACTGTCGGAGAGGGATCGTGCCCTTCAGCCGGCGGCGGCGGCGGCGGCGTTCCAGGACCTTGGGAGACTCCGGCATCCCAATTTACTTCCGCTCCTCGGCTACTGCCTTTCCGGCAGAGAGAAGCTGCTGCTGTACGAATACATGGAGCGCGGCGATCTGCACCGTTGGCTGCACGAGCTCCCGGCCGGATCAACGGACGTAGAAGACTGGACGGGAGACACCTGGGAAGGCCTTCCGGGCGACACCAGCGGCACCGCCGCCCACTGGCCGGCGCGCCACCGGATCGCGGTCGGCATAGCACGAGGTCTGGCCTTCCTCCACCAGGGATGGGTTGGGTCCCACCACGCCCCCGCCGTGCACGGCCGCCTCCTTCCCTCCAACATTCTCCTCTCGGACGACCTCGAGCCCCGCATCGCCGACTTCGCCGGCGGAGGCTCCGGAGGCAGCGCCACGGCGGAGGACGACGTGTACAGCTACGGGCTGATAGTCCTGGAGCTGGTGACCGGGCGGCGCTCGCCCTGGCACGAGGAGGAGGTGGAGAGGCTGCGAGCGGTGGTGCGGGACGGACCGCCGGAGGAGGTGTCGGCGCTGGTTGACCAGCGACTGCCGGTGGAGGCGGAGTGGGAGAGGGAGGCGGCGGAGTGCTTGAGGGTGGGGTATTTGTGCACTGCCAAGGTCCCAGCGAAGAGGCCCAGCATGCAGCAGGTGGTCGCCCTCCTTAAAGATATCCGGCCCGACACCGGCTCTTCCAGATCCCCTCCGCCCTGATTTTGTTTGTATATTGTTTTTGACTGGTAGATGCCGGCCAACGAACATAGGAGTTGGATTTGTTGGCGTTGCTCTCATTTATGATGATTGCCTTTTTGTAAAGATCTTTTTAAAGTCAAACCAATTAAATCATCTGAAACAAGTATCCAAATGGGACTGCAACACTCTTTCAGGTTGTCGTTTACGCCCAATTTCGTGGTGGAGATTGAAATTCTCACATAATATTCAACTGTAACAAAATTAGTGACCTATCAGCAGCAGTGGAGGCCATTTCCTAAGCAAGCGGGCGAAGGTGGAGAACAGAGCAAACTAACATTTTGTTTTGATGCAAATGTCCCGCATCTTTCCGCCATTGCTCTCTGCTTTTCTAAATTTAATAATTCATCAATATTATTATATTACACTACTTT

Network for GWHGAAEX006378

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	55	111	3.20E-07
PF13855.5	LRR_8	144	201	1.40E-08
PF07714.16	Pkinase_Tyr	334	491	1.50E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.330
SRP064423	SRR2545915	Juvenile tuber	1.820
SRP108465	SRR5643513	five period of Gastrodia elata	31.470
	SRR5643514	five period of Gastrodia elata	28.810
	SRR5643515	five period of Gastrodia elata	18.920
	SRR5643524	five period of Gastrodia elata	27.010
	SRR5643525	five period of Gastrodia elata	11.490
	SRR5643528	five period of Gastrodia elata	17.640
	SRR5643658	five period of Gastrodia elata	10.510
	SRR5643659	five period of Gastrodia elata	9.090
	SRR5643660	five period of Gastrodia elata	4.720
	SRR5643661	five period of Gastrodia elata	7.790
	SRR5643662	five period of Gastrodia elata	6.970
	SRR5643663	five period of Gastrodia elata	8.320
	SRR5643664	five period of Gastrodia elata	4.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	65.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.700
SRP279888	Gastro	Gastrodia elata tuber	3.76
	Juven	Juvenile tuber	39.21
	Mother_Gastro	Mother tuber of Gastrodia elata	86.34
	Mother_Juven	Mother tuber of Juvenile	42.73