Detail information of GWHGAAEX006379/evm.TU.scaffold_180.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|119383496|ref|YP_914552.1| | 6.00E-74 | 50S ribosomal protein L1 [Paracoccus denitrificans PD1222] |
| KOG | KOG1569 | 3.00E-62 | 50S ribosomal protein L1 |
| nr | gi|672106784|ref|XP_008797475.1| | 1.51E-170 | PREDICTED: 50S ribosomal protein L1, chloroplastic isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9LY66|RK1_ARATH | 9.00E-63 | 50S ribosomal protein L1, chloroplastic (Precursor) |
| trEMBL | tr|W5I1S4|W5I1S4_WHEAT | 1.00E-154 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_7DL_98FC4C336.2} |
| TAIR | AT3G63490 | 3.00E-62 | Ribosomal protein L1p/L10e family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000181 | 651867 | 675723 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006379
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00687.20 | Ribosomal_L1 | 197 | 393 | 5.60E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0015934 | Cellular Component | large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 46.950 |
| SRR2545915 | Juvenile tuber | 49.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 45.170 |
| SRR5643514 | five period of Gastrodia elata | 51.860 | |
| SRR5643515 | five period of Gastrodia elata | 44.650 | |
| SRR5643524 | five period of Gastrodia elata | 46.680 | |
| SRR5643525 | five period of Gastrodia elata | 36.030 | |
| SRR5643528 | five period of Gastrodia elata | 37.780 | |
| SRR5643658 | five period of Gastrodia elata | 34.240 | |
| SRR5643659 | five period of Gastrodia elata | 38.300 | |
| SRR5643660 | five period of Gastrodia elata | 39.120 | |
| SRR5643661 | five period of Gastrodia elata | 41.470 | |
| SRR5643662 | five period of Gastrodia elata | 40.760 | |
| SRR5643663 | five period of Gastrodia elata | 42.310 | |
| SRR5643664 | five period of Gastrodia elata | 42.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 48.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 48.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.07 |
| Juven | Juvenile tuber | 50.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.03 | |
| Mother_Juven | Mother tuber of Juvenile | 24.47 |