Detail information of GWHGAAEX006386/evm.TU.scaffold_180.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 7.00E-24 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|695035286|ref|XP_009405076.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103988248 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8RWZ5|SD25_ARATH | 1.00E-128 | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (Precursor) |
| trEMBL | tr|I1IU59|I1IU59_BRADI | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
| TAIR | AT5G24080 | 2.00E-106 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000181 | 728608 | 731077 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006386
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01453.23 | B_lectin | 111 | 204 | 3.30E-22 |
| PF08276.10 | PAN_2 | 388 | 417 | 4.50E-05 |
| PF00069.24 | Pkinase | 541 | 805 | 1.20E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_SD-2b |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.550 |
| SRR2545915 | Juvenile tuber | 0.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.060 |
| SRR5643514 | five period of Gastrodia elata | 0.050 | |
| SRR5643515 | five period of Gastrodia elata | 0.060 | |
| SRR5643524 | five period of Gastrodia elata | 0.080 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.030 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.030 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.05 |
| Juven | Juvenile tuber | 0.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.07 | |
| Mother_Juven | Mother tuber of Juvenile | 0.01 |