Detail information of GWHGAAEX006387/evm.TU.scaffold_180.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 6.00E-24 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|672106744|ref|XP_008791435.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Phoenix dactylifera] |
| Swissprot | tr|Q8RWZ5|SD25_ARATH | 1.00E-124 | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (Precursor) |
| trEMBL | tr|Q01LZ8|Q01LZ8_ORYSA | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
| TAIR | AT5G24080 | 3.00E-108 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000181 | 774935 | 777526 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006387
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01453.23 | B_lectin | 111 | 206 | 3.00E-21 |
| PF00954.19 | S_locus_glycop | 271 | 338 | 5.30E-06 |
| PF08276.10 | PAN_2 | 386 | 415 | 4.50E-05 |
| PF00069.24 | Pkinase | 539 | 803 | 5.00E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_SD-2b |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0048544 | Biological Process | recognition of pollen |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.460 |
| SRR2545915 | Juvenile tuber | 0.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.740 |
| SRR5643514 | five period of Gastrodia elata | 1.780 | |
| SRR5643515 | five period of Gastrodia elata | 1.050 | |
| SRR5643524 | five period of Gastrodia elata | 1.500 | |
| SRR5643525 | five period of Gastrodia elata | 0.820 | |
| SRR5643528 | five period of Gastrodia elata | 0.390 | |
| SRR5643658 | five period of Gastrodia elata | 0.470 | |
| SRR5643659 | five period of Gastrodia elata | 0.360 | |
| SRR5643660 | five period of Gastrodia elata | 0.290 | |
| SRR5643661 | five period of Gastrodia elata | 0.560 | |
| SRR5643662 | five period of Gastrodia elata | 0.600 | |
| SRR5643663 | five period of Gastrodia elata | 0.420 | |
| SRR5643664 | five period of Gastrodia elata | 0.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.19 |
| Juven | Juvenile tuber | 2.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.68 | |
| Mother_Juven | Mother tuber of Juvenile | 0.91 |