Detail information of GWHGAAEX006390/evm.TU.scaffold_180.45


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|182414082|ref|YP_001819148.1|4.00E-15NHL repeat-containing protein [Opitutus terrae PB90-1]
nrgi|743770368|ref|XP_010915472.1|0PREDICTED: uncharacterized protein LOC105040581 [Elaeis guineensis]
trEMBLtr|M0THC1|M0THC1_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P13840_001}
TAIRAT3G148607.00E-145NHL domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000181891858904178-
Transcript Sequence

Network for GWHGAAEX006390

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01436.20NHL1341602.60E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.900
SRR2545915Juvenile tuber24.780
SRP108465SRR5643513five period of Gastrodia elata13.280
SRR5643514five period of Gastrodia elata14.130
SRR5643515five period of Gastrodia elata15.210
SRR5643524five period of Gastrodia elata15.890
SRR5643525five period of Gastrodia elata8.100
SRR5643528five period of Gastrodia elata6.120
SRR5643658five period of Gastrodia elata8.070
SRR5643659five period of Gastrodia elata10.320
SRR5643660five period of Gastrodia elata10.290
SRR5643661five period of Gastrodia elata11.100
SRR5643662five period of Gastrodia elata9.480
SRR5643663five period of Gastrodia elata12.100
SRR5643664five period of Gastrodia elata9.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.190
SRR6049655Rhizomagastrodiae_C368-T10_good_19.100
SRR6049656Rhizomagastrodiae_C368-T07_good_115.730
SRR6049657Rhizomagastrodiae_C368-T07_good_114.690
SRR6049658Rhizomagastrodiae_C368-T04_good_113.460
SRR6049659Rhizomagastrodiae_C368-T04_good_111.000
SRR6049660Rhizomagastrodiae_C368-T01_good_114.910
SRR6049661Rhizomagastrodiae_C368-T04_good_117.930
SRR6049662Rhizomagastrodiae_C368-T01_good_121.780
SRR6049663Rhizomagastrodiae_C368-T01_good_119.560
SRR6049664Rhizomagastrodiae_C368-T10_good_116.170
SRR6049665Rhizomagastrodiae_C368-T10_good_116.170
SRP279888GastroGastrodia elata tuber 19.20
JuvenJuvenile tuber12.08
Mother_GastroMother tuber of Gastrodia elata 6.50
Mother_JuvenMother tuber of Juvenile 6.56