Detail information of GWHGAAEX006391/evm.TU.scaffold_180.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 8.00E-69 | Heat shock transcription factor |
| nr | gi|743756398|ref|XP_010916598.1| | 2.18E-169 | PREDICTED: heat stress transcription factor A-4b-like [Elaeis guineensis] |
| Swissprot | tr|Q94J16|HFA4B_ORYSJ | 3.00E-111 | Heat stress transcription factor A-4b |
| trEMBL | tr|M0SEY0|M0SEY0_MUSAM | 4.00E-121 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P15640_001} |
| TAIR | AT4G18880 | 8.00E-69 | heat shock transcription factor A4A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000181 | 917793 | 919656 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006391
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 11 | 100 | 3.30E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.060 |
| SRR2545915 | Juvenile tuber | 19.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.130 |
| SRR5643514 | five period of Gastrodia elata | 8.190 | |
| SRR5643515 | five period of Gastrodia elata | 9.910 | |
| SRR5643524 | five period of Gastrodia elata | 9.230 | |
| SRR5643525 | five period of Gastrodia elata | 15.060 | |
| SRR5643528 | five period of Gastrodia elata | 14.740 | |
| SRR5643658 | five period of Gastrodia elata | 15.260 | |
| SRR5643659 | five period of Gastrodia elata | 15.480 | |
| SRR5643660 | five period of Gastrodia elata | 11.320 | |
| SRR5643661 | five period of Gastrodia elata | 12.380 | |
| SRR5643662 | five period of Gastrodia elata | 17.710 | |
| SRR5643663 | five period of Gastrodia elata | 13.170 | |
| SRR5643664 | five period of Gastrodia elata | 20.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.92 |
| Juven | Juvenile tuber | 10.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.26 | |
| Mother_Juven | Mother tuber of Juvenile | 13.00 |