Gene detail

Detail information of GWHGAAEX006398/CADD00517.4.gene

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0017	1.00E-15	FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
nr	gi\|147852577\|emb\|CAN80650.1\|	2.53E-25	hypothetical protein VITISV_022906 [Vitis vinifera]
Swissprot	tr\|P10978\|POLX_TOBAC	2.00E-19	Endonuclease
trEMBL	tr\|A5B0E4\|A5B0E4_VITVI	9.00E-26	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80650.1}
TAIR	AT4G03810	1.00E-15	transposable element gene

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000181	1126607	1132446	+

Transcript Sequence
>GWHTAAEX006398 AAAGAAAAATGTAAATCCTTAAAAAGAAATAATATTCTTAAAATCATTGGCTAAATACTAAAATATCGGAAACTTAAAATGCAGATTGAGCGAACTGTCACTCATCCAAACTTAAAGGACAAATGGTACTCAGTATATGACAAGTATTACATTTTATATTGTTATTACTGCTTAGCTTTTAATTGCTTTGAGCCAAAATTTCAATTTGAAGCTTGGTTGGTTGTTCGGAATCAACGTGGTAACATTCGTGGTTAGTTACTGGAAAAATGACATCAGTAACAGCATTCGTGGCTAATTGCTGGAAAGAAGACATCAGTAATAGCATTCATCGCCAGTTACTGGAAAAATGACATCAGTAACGACATTCGTGGCTAATTACTGGAAAAATGACATCGGTAATAGCATTTTCGTGGGTTGTTACTGGAAAAATGACATCGGTAACAACATTCGTGGTGGGTTATTAGAAAAATGACATCAGTAACCTATATCTTTGAGCTAATATCTTTTGTAGGAAATTTATTATTTCATTTGCGCTTTTTTCTTATTATTTTCCTGCATTTCTTTCGCAAATCGCATCTCTGCTAATATAAAATGTAATACTGTATTGATTACTGTGGCACTTAGAGTACTCTCTAATTATTGGGAATTTCAATCCAGTATTATTTGTTGTAAAATATCAGGTCAGATACTTCTGGAAGAGCTCAAACAAGAACCCTAATGCTTAAAATTTTCAATCTGCCAATAGATTTACGACGGCACTGTTTTTGCTTATCTTTTATATTTATTTTATTTTTCACTTTTGTATGAGAAGTACGATGAAAGATCTTGTAATATGAACTTTGAAATAAATGAGAAATGTCCTATATTTTTATGTGTCCATTTTTTTTCATTACTCAATATGATCTTGCGGTAAGTGAACACCCGATGTTGGAACGATTTCTGCTGAACCGGCAGTGGGGCTTCACAACTACGTGCTTGGCAAGAAGACGTATATCATTTGCTATTACCATCCATAATATCAATTGATACTTGATTACACGGCACACAAATATATGAGATTTTTAGTGCAGATGAAGTCATTCGACGAATGACCATATTTTTACTTTTATTGATGCTATTGTAGATATGTTTGGGTGTACACCAGAAGTACAAAGATGCGGTATTTGAAAAATTCATGATCTTGAAGTAATATGCGGAGAACTAGACTGCAGAAGGATAAAGAAGATTATATCAACTAATGGGTGACAAGTACACTTCAGATGAATTCTTGCAAAAGTGCTAAAAAGTTGGGGTAGAACACCACTTACAGTGTGGGAGACACCACAAACAACAGAACGAGGTGGTAGAGCAAATGAATAGGACTTTGATGGAGAAAGTATTTGTATGCTTTCGAATGCTTGGGTGGAACAAGAATTTTGGGTTTAGGCCCTAAACTATGCATGCTACTTAGTTAACTATTTATCTTCTACATCAATTGAAAAGAATACGTTGAAGGAGATGTATTAATGTAAACATGTTTATGATTATAATCAGTTAAAAAATTTGAATGTCTAGTTTTTTGTCTTCTAAAATCTGATAAGTTGGATTTATGGGCTAAAAAGGTAATTTTTATTTAGTATAGGTATGGAGTCAAATGTTTTAAATTATTTGATATGGATGAGTCAAAAAAATTGTTATAAGCAAGGATGTGACATTTGATGAGCTCAAAGATATTAGAGTAGGTGGAGAGTCCAATAGGGGCCATAGAAATTTTGCAAATGGTGGAGCTTGATGAAACCTGATTTGCTCCATAGATACCATCCTCCTCAAAGCCTGTATTTGAGCAAAAAAATTTAGTAGATAATCAAGGGGATGCCGAGGTTGAGGAAAAAAGGGTAGATGAAGCTCCAATGCAAGAGTTTATTGCAACAGTAGAACTAGGAGGTAGAAGGTCTCAAGGCCAGCATGGGTAAGGGACTATATTGGTTTTGGACTCTCAGCTACTAAGGCTGATATTCCATGCCATTTCAAGGAAGCTGTGGAGAGTTTTAAAATGAGTATTGGAATAAAGCTATAAATAAAGAGATGAAATCACTTTAGAAGAATGCAGTATGGACGTTGGTGATGCTACCTTCAAATAGAAGAGCTATTAGATGCAAATGGGTTTATGTCAAGAAAGAGGGACCTCAAGGAGCTGCAAATGTGTGCTACAATCAAGATTAATAGTTAAAGGATTTCATAGAGAGAATAGATAGACTATGATAAAGTATTTTTCCCACTTGTCAAATATCCCATAATCCATGTTCTTTTGATGCTTGCAGTTTGATCTGATCTTGCGGCAACTTGATGCCAAAACAACATTCTTACACGGGGAATTAGAAAAATATATTTACACGAGGAAACTCTCTAGATACAGTGCCACAAATAAAAAGGACTTAAGTGTGCAAATTGGACAAGTCATTTTATGACTTGAAGCAGTCATATCGTTAGTGGTATAGGAAGTTCGACTAGTTTATGTAGGGATAAAATATAAGAGGAACTAATATGACCCTTGTGCATATTTCAAAATATTGAACAATGGTGAGTTTATCAATTTGTTACTATATGTGGGCGATATGCTTATCGCATCTGATAGTCAGACTGAGGTGGATAAGATGGAGCGGTGACCACCACACTTCGATATGAAGGAATCAGGTGAAGCTCTCAAGATTTGGGGCATGGGGATTTAGAGAGATAGAGCATCTGGGAGGATATGCCTTACTCAGAAGCTTCTTGCAGACGGTGCTGAAAATGTTCAGGGTTGATGACTTAGCCAAGGGTGCGACTCTATCTTTAGCAGCATATTTTCATTTGAGTGCTGAGTTGAGTCCTAGAGATTTGGGTGAGAGAAAAGAGATGAAAAAGATTTTTTATGCCAGTGTAGTAGGTAGTCTGATGTATGTAATGATTTGCACAAGACTTGATTTGGCACAGGCAGTAGGGTGGTTGCCAGATATATGCATGATCTTAGGAGAGAATATTGACAATCAGTGAAGTGGGGCTTGAGATATTTGAAGAGATGTTTGAAGAGCAGTATCAATGTTGGGTAATATTTGAGAGACAAGCATTAGTCTCCAACTTATGTGTTGGTTATATGAATTATGACTATGCAGATGACATTGTTTGACGATGATCTATGATGAGTTATGTTCACATTGGCAAAAACACTGGTTAGCTAGAGATCTACATTGTAGCCTACAGTTGTACTATCTACTACTGAGACGGAGTATATTTTCATCACAAAAGCGATGAAGGAGGTAATTTAGATGCAAGATCTATTGAATGATTTGAGGTGCAACTGCAACAAGTGAGTGTATTTTGCAACATTCAATGTGTGATTCGCTTGGCTACTAACTCAATTTATCATGCAAAGGCTAAATAAATTGACATGTGGTATGACTTTGTCCGAGATTTGATTGAGAAGGGCGACATCTTGTTAAAGAAGATTAAATCAAGAAGAAATTGGCTGATATGCTTACCAAAGCTATATTGCTATAAAATTTCATCTATTACAAGAGTTTGGTGAACATTGGAGATTACTGGTGGGAGCTACCTCTAGTTGTCAACTATATGCTGTTTGATTCCTTTGGGAGAGGGATACCCATGCAGCCTATTTTGGGTGCATCCACTTTAGTTGCTTGGCCCGGTTCAGTACGGGTTATCTTTCATTTGCCGCAAATGAGAGCTGGGGTGGAGAATTGTGGAGATGATTTGAGTAAAGAAGATGAGTTTAGGGCTCATTTCTTATGATTTGAGGAGCTTTAGGTTGCATTGGAAGCATTACAGACTGACCAAAGACGGAACAAATACAAAACGGGCCCAAAACAGGGATAACAACAAGTTTTTGAGCCGACACGCCCAAGTGCCTGAATTTTTGTTTGAGCACCATTTAGGACGAGAGGGGCCCAAGCTTTCGACGCTTTGCCGAGAGGGTCTGGGAGCACCGTAAACCCGAGAGATAAAAGCAAGTTTTTGAGTCGTGGATGAGAAGAATCTTGAAAGAATGGCTGCAGCTGATCTCACGAGATAAATGACACTGGATGAATAGAAGCGCTTGAGAGAGTGGAGAGGATTCAGTGATTTCTAAAGGGTGTTGACGATGGCTTGGCTACAATATAGGGGATGAAGGTAACGAGCAGGCTACTCATTCTTCCCCGTAAGTCTTCAATGTTAAGAATATTGTAAGGATTCACAATAAGCAAACTACTTTTTTTTCATTAAGGAGCAGCCTAATCAAGTCAGCTCATGCATGATTAGATTGGGGTAATCTGATTATTTGTAAATGTGAAGAAATGGGGGAACTTGCTTCCCTTGCAAATTAATTGGGATTCAAATCATCTTATAAATCCCGCATACTAAACACCAAAATGTGTAACTATTGGAATTTGGATTACTTTATACTCGGTATCTCCAATACCAAACAACCTCTTATTATTCAAATATTTTTTGGCATTGTAATTTGGCCATATGTGTATGATCAAACAATTTTATCAATTTGTTGATATGATATATGATTTTTGAGCCGACGCGCCCAAGCTCCTGAATTTTGTTTGGGCTCCATTTTGAACGAGAGGGGCCCAAGCTTTCGGCGCTTTGCCGAGAGGGTCTGCGAGCACCGTAAACCCGAGAGATAGGCGCTGGACGGATTGCATTTGCTTATTTTAGGTCAAGGAGGCGGTGCTTGGGCGTGCCCAAGCACCTTACGGAAGTTGCAACACGTCTTTCCCTCCTAATACTGTAAAAAAGTTCTTTAATTTGGTAGTTATGATGAAATTTGGGTCCAAGTATAAATACTTAAGATGTTTAAGTGTTGTTCAGTGAAGAAACTTTATCTTTATATGCCTTTGAGGCTGCCATTGCTATTTGTTAAAAAGGCATCCATTGTTAAGGGTTTAAAACCCTTTGAACTTGTAACATCTTCATTCTCCTACATTTAGTGAAATACTCTTCTCTCTTCTCCATAGACGTCTGTATCTCACCAAACCACATAAATTTTGTATTTTATGTTGTGCTCACATGAATCCATATTTGTGATTGTGTTTTTTGGCGAAGATGATTTGTATTTGTCTTGGGCGCAATCTCTTGAACATGGGAAATCATATCAGGAGACTAGCCCAAATTAAAGTTGGTGATGATAATGGAGGTTTAGAAGAATGGGGATGAAGAGGGCAGCCTTACTGGACAACCATGGCTACCACCACAGCCATACGCCCCAATGGCCTCGGTCCATGCTCGACACAACAAGAACTACCAAGAAGTCACAGAACAAATGTGGCGCCGGTGAAACAAAGCAGGACGGTGCCATAGACTAAATGAACTATCGACACTCAAGGAGACGAGACTAGGAAGCGCTGTAATAGAGAAGCACTTCACTTCCAACTGTCATCAAAACCAAACTCTATGGCATATAATATATAGATTTAAACCCACCAACTATTCATGTAGGGATTGTAACATTTTCTCTTCCATTCTATATGCTCCATCGTGTGATTTTAATGGCCACAATTCAGGTTAACGTATGCTAAAAGACAAAAAGTCCCATCATGTGATGTGACTTCTTATCTTTTTGTGCGTGACAATATTTGGCATTGAGATTATATAATCGATTGTAAAGAATTTAGAAGGAACAGTACTAATTTTGTTTTATATAGATGCGTGTATGTATAGATTCCAAGTATGTATAATATTCTACACAAGTAAATTGACAACCAAAACAGTAACAGCACAAGGCCAAAATACTTCCATGACAATCCTTAAAAAAATTCCATTTAATCCCTAATCAATGATCTCAATGACTTTATACATCCATTATGGGTCAGGAA

Network for GWHGAAEX006398

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX006398
KEKCKSLKRNNILKIIGILKYRKLKMQIERTVTHPNLKDKWYSVYDKYYILYCYYCLAFNCFEPKFQFEAWLVVRNQRGNIRGLLEKHQQHSWLIAGKKTSVIAFIASYWKNDISNDIRGLLEKHRHFRGLLLEKHRQHSWWVIRKMTSVTYIFELISFVGNLLFHLRFFLIIFLHFFRKSHLCYKMYCIDYCGTSTLLLGISIQYYLLNIRSDTSGRAQTRTLMLKIFNLPIDLRRHCFCLSFIFILFFTFVEVRKILYELNKEMSYIFMCPFFFITQYDLAVSEHPMLERFLLNRQWGFTTTCLARRRISFAITIHNINYLITRHTNIDFCRSHSTNDHIFTFIDAIVDMFGCTPEVQRCGIKIHDLEVICGELDCRRIKKIISTNGQVHFRILAKVLKSWGRTPLTVWETPQTTERGGRANEDFDGESICMLSNAWVEQEFWVALNYACYLVNYLSSTSIEKNTLKEMYCKHVYDYNQLKNLNVFFVFNLISWIYGLKRFLFSIGMESNVLNYLIWMSQKNCYKQGCDIAQRYSRWRVQGPKFCKWWSLMKPDLLHRYHPPQSLYLSKKIIIKGMPRLRKKGMKLQCKSLLQQNEVEGLKASMGKGLYWFWTLSYGYSMPFQGSCGEFNEYWNKAINKEMKSLKNAVWTLVMLPSNRRAIRCKWVYVKKEGPQGAANVCYNQDLKDFIERIDRLSIFPTCQISHNPCSFDACSLISCGNLMPKQHSYTGNKNIFTRGNSLDTVPQIKRTVCKLDKSFYDLKQSYRWYRKFDFMGNIRGTNMTLVHISKYTMVSLSICYYMWAICLSHLIVRLRWIRWSGDHHTSIRNQVKLSRFGAWGFREIEHLGGYALLRSFLQTVLKMFRVDDLAKGATLSLAAYFHLSAELSPRDLGERKEMKKIFYASVVGSLMYVMICTRLDLAQAVGWLPDICMILGENIDNQSGADIRDVRAVSMLGNIETSISLQLMCWLYELLCRHCLTMIYDELCSHWQKHWLARDLHCSLQLYYLLLRRSIFSSQKRRRFRCKIYMIGATATSECILQHSMCDSLGYLNLSCKGINHVVLCPRFDEGRHLVKEDIKKKLADMLTKAILLNFIYYKSLVNIGDYWWELPLVVNYMLFDSFGRGIPMQPILGASTLVAWPGSVRVIFHLPQMRAGVENCGDDLSKEDEFRAHFLFEELVALEALQTDQRRNKYKTGPKQGQQVFEPTRPSAIFVAPFRTRGAQAFDALPRGSGSTVNPRDKSKFLSRGEESKNGCSSHEINDTGIEALERVERIQFLKGVDDGLATIGMKVTSRLLILPRKSSMLRILGFTISKLLFFHGAASSQLMHDIGVILFVNVKKWGNLLPLQINWDSNHLINPAYTPKCVTIGIWITLYSVSPIPNNLLLFKYFLALFGHMCMIKQFYQFVDMIYDFADAPKLLNFVWAPFTRGAQAFGALPRGSASTVNPRDRRWTDCICLFVKEAVLGRAQAPYGSCNTSFPPNTVKKFFNLVVMMKFGSKYKYLRCLSVVQRNFIFICLGCHCYLLKRHPLLRVNPLNLHLHSPTFSEILFSLLHRRLYLTKPHKFCILCCAHMNPYLLCFLAKMICICLGRNLLNMGNHIRRLAQIKVGDDNGGLEEWGRGQPYWTTMATTTAIRPNGLGPCSTQQELPRSHRTNVAPVKQSRTVPTKTIDTQGDETRKRCNREALHFQLSSKPNSMAYNIITHQLFMGLHFLFHSICSIVFWPQFRLTYAKRQKVPSCDVTSYLFVRDNIWHDYIIDCKEFRRNSTNFVLYRCVYVIPSMYNILHKIDNQNSNSTRPKYFHDNPKNSISLINDLNDFIHPLWVR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.110
SRP064423	SRR2545915	Juvenile tuber	1.150
SRP108465	SRR5643513	five period of Gastrodia elata	0.760
	SRR5643514	five period of Gastrodia elata	0.710
	SRR5643515	five period of Gastrodia elata	0.770
	SRR5643524	five period of Gastrodia elata	0.680
	SRR5643525	five period of Gastrodia elata	0.490
	SRR5643528	five period of Gastrodia elata	0.310
	SRR5643658	five period of Gastrodia elata	0.330
	SRR5643659	five period of Gastrodia elata	1.440
	SRR5643660	five period of Gastrodia elata	1.640
	SRR5643661	five period of Gastrodia elata	1.350
	SRR5643662	five period of Gastrodia elata	0.720
	SRR5643663	five period of Gastrodia elata	1.120
	SRR5643664	five period of Gastrodia elata	0.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.380
SRP279888	Gastro	Gastrodia elata tuber	0.53
	Juven	Juvenile tuber	2.04
	Mother_Gastro	Mother tuber of Gastrodia elata	0.80
	Mother_Juven	Mother tuber of Juvenile	0.71