Detail information of GWHGAAEX006402/evm.TU.scaffold_180.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 1.00E-106 | MADS box transcription factor |
| nr | gi|18650789|gb|AAL76415.1|AF234617_1 | 3.56E-163 | MADS-box transcription factor [Phalaenopsis equestris] |
| Swissprot | tr|Q40872|AG_PANGI | 2.00E-125 | Floral homeotic protein AGAMOUS |
| trEMBL | tr|Q8RVW5|Q8RVW5_PHAEQ | 1.00E-163 | MADS-box transcription factor {ECO:0000313|EMBL:AAL76415.1} |
| TAIR | AT4G18960 | 1.00E-106 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000181 | 1370783 | 1401032 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006402
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 30 | 77 | 1.50E-26 |
| PF01486.16 | K-box | 104 | 191 | 5.10E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.500 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.810 |
| SRR5643514 | five period of Gastrodia elata | 0.510 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.660 | |
| SRR5643525 | five period of Gastrodia elata | 0.140 | |
| SRR5643528 | five period of Gastrodia elata | 0.820 | |
| SRR5643658 | five period of Gastrodia elata | 0.720 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.120 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.62 | |
| Mother_Juven | Mother tuber of Juvenile | 1.69 |