Detail information of GWHGAAEX006404/evm.TU.scaffold_180.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|166366485|ref|YP_001658758.1| | 2.00E-19 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| nr | gi|743756273|ref|XP_010915966.1| | 0 | PREDICTED: protein SPA1-RELATED 4 [Elaeis guineensis] |
| Swissprot | tr|Q94BM7|SPA4_ARATH | 0 | Protein SPA1-RELATED 4 |
| trEMBL | tr|V4JXD4|V4JXD4_EUTSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESQ30120.1} |
| TAIR | AT1G53090_2 | 2.00E-173 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000181 | 1441410 | 1473689 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006404
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 97 | 184 | 0.0001 |
| PF00400.31 | WD40 | 390 | 416 | 0.17 |
| PF00400.31 | WD40 | 477 | 510 | 0.00071 |
| PF00400.31 | WD40 | 558 | 594 | 0.0061 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PEK_PEK |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.100 |
| SRR2545915 | Juvenile tuber | 0.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.930 |
| SRR5643514 | five period of Gastrodia elata | 13.340 | |
| SRR5643515 | five period of Gastrodia elata | 8.570 | |
| SRR5643524 | five period of Gastrodia elata | 4.860 | |
| SRR5643525 | five period of Gastrodia elata | 2.480 | |
| SRR5643528 | five period of Gastrodia elata | 2.680 | |
| SRR5643658 | five period of Gastrodia elata | 3.030 | |
| SRR5643659 | five period of Gastrodia elata | 0.210 | |
| SRR5643660 | five period of Gastrodia elata | 0.370 | |
| SRR5643661 | five period of Gastrodia elata | 1.020 | |
| SRR5643662 | five period of Gastrodia elata | 0.250 | |
| SRR5643663 | five period of Gastrodia elata | 0.500 | |
| SRR5643664 | five period of Gastrodia elata | 0.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.28 |
| Juven | Juvenile tuber | 1.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.88 | |
| Mother_Juven | Mother tuber of Juvenile | 3.69 |