Gene detail

Detail information of GWHGAAEX006409/evm.TU.scaffold_180.76

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|158513348\|sp\|A3B0Y1.1\|MT3B_ORYSJ	1.89E-17	RecName: Full=Metallothionein-like protein 3B; AltName: Full=Class I metallothionein-like protein 3B; AltName: Full=OsMT-I-3b [Oryza sativa Japonica Group]
Swissprot	tr\|A3B0Y1\|MT3B_ORYSJ	9.00E-20	Metallothionein-like protein 3B
trEMBL	tr\|J3M4S4\|J3M4S4_ORYBR	5.00E-18	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB05G15980.1}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000181	1595853	1596624	-

Transcript Sequence
>GWHTAAEX006409 ATCAAACGAAGAACGCGAACTATCAGCCAACCACTCGCACGAAAAACAAGCAATCATGTCAACCTGCGGCAATTGCGACTGTGCTGACAGGAGCCAGTGCGTGAAGAAGTACAACAACTATGGCATCATCATTGTTGACAAAGAGGAGAGGTACATGAAGGAAGAGGCTGAGACAGCAGGGACTGGAGAGAATGATGCGAGCTGCAAGTGTGCTTCCAACTGCACTTGCCCTGGCTGCAACTGTGGCAAATGATCAAGAACTGCTCCATTTGGAATAATATATATGCATTAAATATACTCTGTATCAGCTGGTTGCTTTAAGACAATGTGTGTTGCCTGCTACATCTGATGTAACTAGCCTTCAATATATGTGACTAATATTCTTATACCATGTCTCCTTTTTCATGCTGCTTGATATTTTCAATTTGATATTGCTTTGCGGTCCATTCTATGCTAAATTAGAGATATGATATCTCGGATCAACTTGTTTGATCTAAATGATGGTTTCATGAAAGACCCTAAAGTTGCCAAAAACAATAGTGAAATATCACTTATTTATATTATATGAAAACTTATTAGAATAAAG

Network for GWHGAAEX006409

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	963.330
SRP064423	SRR2545915	Juvenile tuber	683.740
SRP108465	SRR5643513	five period of Gastrodia elata	864.700
	SRR5643514	five period of Gastrodia elata	1056.500
	SRR5643515	five period of Gastrodia elata	1723.530
	SRR5643524	five period of Gastrodia elata	982.430
	SRR5643525	five period of Gastrodia elata	30004.100
	SRR5643528	five period of Gastrodia elata	15232.600
	SRR5643658	five period of Gastrodia elata	11614.200
	SRR5643659	five period of Gastrodia elata	341.790
	SRR5643660	five period of Gastrodia elata	32.920
	SRR5643661	five period of Gastrodia elata	250.930
	SRR5643662	five period of Gastrodia elata	658.470
	SRR5643663	five period of Gastrodia elata	646.460
	SRR5643664	five period of Gastrodia elata	312.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2131.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1166.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1790.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1693.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2304.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2783.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2237.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1897.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1835.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1738.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1560.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1560.700
SRP279888	Gastro	Gastrodia elata tuber	1,645.27
	Juven	Juvenile tuber	12.31
	Mother_Gastro	Mother tuber of Gastrodia elata	7,090.88
	Mother_Juven	Mother tuber of Juvenile	707.43