Detail information of GWHGAAEX006413/evm.TU.scaffold_180.82


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|184201397|ref|YP_001855604.1|6.00E-107phosphoribosylaminoimidazole carboxylase [Kocuria rhizophila DC2201]
KOGKOG28350Phosphoribosylamidoimidazole-succinocarboxamide synthase
nrgi|590642370|ref|XP_007030499.1|0Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1 [Theobroma cacao]
Swissprottr|P55195|PUR6_VIGAC0Phosphoribosylaminoimidazole carboxylase, chloroplastic (Precursor; Fragment)
trEMBLtr|A0A061F1S5|A0A061F1S5_THECC0Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1 {ECO:0000313|EMBL:EOY11001.1}
TAIRAT2G376900phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018117551461767410-
Transcript Sequence

Network for GWHGAAEX006413

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02222.21ATP-grasp1913622.40E-56
PF00731.19AIRC4716181.30E-64
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11808ADE2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Purine metabolismmap00230

Gene Ontology

GO term OntologyName
GO:0006189Biological Process'de novo' IMP biosynthetic process
GO:0005524Molecular FunctionATP binding
GO:0004638Molecular Functionphosphoribosylaminoimidazole carboxylase activity
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.160
SRR2545915Juvenile tuber23.750
SRP108465SRR5643513five period of Gastrodia elata19.580
SRR5643514five period of Gastrodia elata20.720
SRR5643515five period of Gastrodia elata19.270
SRR5643524five period of Gastrodia elata18.100
SRR5643525five period of Gastrodia elata35.330
SRR5643528five period of Gastrodia elata26.790
SRR5643658five period of Gastrodia elata29.730
SRR5643659five period of Gastrodia elata26.860
SRR5643660five period of Gastrodia elata25.230
SRR5643661five period of Gastrodia elata24.570
SRR5643662five period of Gastrodia elata29.200
SRR5643663five period of Gastrodia elata32.870
SRR5643664five period of Gastrodia elata27.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.180
SRR6049655Rhizomagastrodiae_C368-T10_good_120.040
SRR6049656Rhizomagastrodiae_C368-T07_good_120.940
SRR6049657Rhizomagastrodiae_C368-T07_good_121.900
SRR6049658Rhizomagastrodiae_C368-T04_good_124.090
SRR6049659Rhizomagastrodiae_C368-T04_good_121.730
SRR6049660Rhizomagastrodiae_C368-T01_good_121.880
SRR6049661Rhizomagastrodiae_C368-T04_good_126.080
SRR6049662Rhizomagastrodiae_C368-T01_good_118.310
SRR6049663Rhizomagastrodiae_C368-T01_good_119.470
SRR6049664Rhizomagastrodiae_C368-T10_good_117.440
SRR6049665Rhizomagastrodiae_C368-T10_good_117.440
SRP279888GastroGastrodia elata tuber 31.54
JuvenJuvenile tuber14.63
Mother_GastroMother tuber of Gastrodia elata 15.75
Mother_JuvenMother tuber of Juvenile 12.39