Detail information of GWHGAAEX006416/evm.TU.scaffold_180.85


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|334145937|ref|YP_004508864.1|2.00E-28leucine-rich protein [Porphyromonas gingivalis TDC60]
KOGKOG05313.00E-161Protein phosphatase 1, regulatory subunit, and related proteins
nrgi|695036311|ref|XP_009405606.1|3.66E-178PREDICTED: protein phosphatase 1 regulatory subunit pprA-like [Musa acuminata subsp. malaccensis]
Swissprottr|F4IIU4|AIR9_ARATH2.00E-08187-kDa microtubule-associated protein AIR9
trEMBLtr|M0T910|M0T910_MUSAM6.00E-174Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P21620_001}
TAIRAT5G196803.00E-161Leucine-rich repeat (LRR) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018118590621922345+
Transcript Sequence

Network for GWHGAAEX006416

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13516.5LRR_672900.09
PF12799.6LRR_42302701.50E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.570
SRR2545915Juvenile tuber26.770
SRP108465SRR5643513five period of Gastrodia elata15.030
SRR5643514five period of Gastrodia elata13.790
SRR5643515five period of Gastrodia elata16.670
SRR5643524five period of Gastrodia elata14.350
SRR5643525five period of Gastrodia elata14.730
SRR5643528five period of Gastrodia elata16.740
SRR5643658five period of Gastrodia elata14.540
SRR5643659five period of Gastrodia elata17.510
SRR5643660five period of Gastrodia elata17.360
SRR5643661five period of Gastrodia elata17.390
SRR5643662five period of Gastrodia elata17.250
SRR5643663five period of Gastrodia elata17.270
SRR5643664five period of Gastrodia elata15.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.150
SRR6049655Rhizomagastrodiae_C368-T10_good_120.450
SRR6049656Rhizomagastrodiae_C368-T07_good_117.740
SRR6049657Rhizomagastrodiae_C368-T07_good_119.110
SRR6049658Rhizomagastrodiae_C368-T04_good_119.950
SRR6049659Rhizomagastrodiae_C368-T04_good_124.650
SRR6049660Rhizomagastrodiae_C368-T01_good_116.970
SRR6049661Rhizomagastrodiae_C368-T04_good_118.240
SRR6049662Rhizomagastrodiae_C368-T01_good_116.320
SRR6049663Rhizomagastrodiae_C368-T01_good_118.110
SRR6049664Rhizomagastrodiae_C368-T10_good_119.970
SRR6049665Rhizomagastrodiae_C368-T10_good_119.970
SRP279888GastroGastrodia elata tuber 15.90
JuvenJuvenile tuber32.12
Mother_GastroMother tuber of Gastrodia elata 19.28
Mother_JuvenMother tuber of Juvenile 31.73