Detail information of GWHGAAEX006417/evm.TU.scaffold_180.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0239 | 7.00E-153 | Kinesin (KAR3 subfamily) |
| nr | gi|743770223|ref|XP_010915403.1| | 0 | PREDICTED: kinesin-4-like [Elaeis guineensis] |
| Swissprot | tr|Q8W1Y3|KP1_ARATH | 4.00E-75 | Kinesin KP1 |
| trEMBL | tr|M0SS23|M0SS23_MUSAM | 0 | Kinesin-like protein {ECO:0000256|RuleBase:RU000394} |
| TAIR | AT1G63640 | 7.00E-153 | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000181 | 1942315 | 1968073 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006417
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00307.30 | CH | 17 | 119 | 1.20E-05 |
| PF16796.4 | Microtub_bd | 496 | 656 | 2.60E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007018 | Biological Process | microtubule-based movement |
| GO:0003777 | Molecular Function | microtubule motor activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0008017 | Molecular Function | microtubule binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.430 |
| SRR2545915 | Juvenile tuber | 6.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.690 |
| SRR5643514 | five period of Gastrodia elata | 5.570 | |
| SRR5643515 | five period of Gastrodia elata | 5.740 | |
| SRR5643524 | five period of Gastrodia elata | 5.940 | |
| SRR5643525 | five period of Gastrodia elata | 3.800 | |
| SRR5643528 | five period of Gastrodia elata | 3.340 | |
| SRR5643658 | five period of Gastrodia elata | 3.820 | |
| SRR5643659 | five period of Gastrodia elata | 5.260 | |
| SRR5643660 | five period of Gastrodia elata | 5.690 | |
| SRR5643661 | five period of Gastrodia elata | 5.550 | |
| SRR5643662 | five period of Gastrodia elata | 4.070 | |
| SRR5643663 | five period of Gastrodia elata | 4.770 | |
| SRR5643664 | five period of Gastrodia elata | 4.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.09 |
| Juven | Juvenile tuber | 5.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.44 | |
| Mother_Juven | Mother tuber of Juvenile | 9.68 |