Detail information of GWHGAAEX006423/evm.TU.scaffold_181.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|336121022|ref|YP_004575797.1|2.00E-31Acidic ribosomal protein P0-like protein [Methanothermococcus okinawensis IH1]
KOGKOG08157.00E-17960S acidic ribosomal protein P0
nrgi|695025180|ref|XP_009399833.1|0PREDICTED: 60S acidic ribosomal protein P0-like [Musa acuminata subsp. malaccensis]
Swissprottr|O04204|RLA01_ARATH2.00E-17960S acidic ribosomal protein P0-1
trEMBLtr|M0SWA9|M0SWA9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P06800_001}
TAIRAT2G400107.00E-179Ribosomal protein L10 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000177845703854019+
Transcript Sequence

Network for GWHGAAEX006423

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00466.19Ribosomal_L1071086.60E-18
PF00428.18Ribosomal_60s2343218.80E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02941RP-LP0, RPLP0 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0042254Biological Processribosome biogenesis

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms172.910
SRR2545915Juvenile tuber228.550
SRP108465SRR5643513five period of Gastrodia elata480.620
SRR5643514five period of Gastrodia elata537.510
SRR5643515five period of Gastrodia elata473.970
SRR5643524five period of Gastrodia elata530.840
SRR5643525five period of Gastrodia elata213.990
SRR5643528five period of Gastrodia elata274.030
SRR5643658five period of Gastrodia elata169.350
SRR5643659five period of Gastrodia elata359.390
SRR5643660five period of Gastrodia elata363.230
SRR5643661five period of Gastrodia elata418.720
SRR5643662five period of Gastrodia elata326.890
SRR5643663five period of Gastrodia elata330.900
SRR5643664five period of Gastrodia elata317.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1366.340
SRR6049655Rhizomagastrodiae_C368-T10_good_1417.190
SRR6049656Rhizomagastrodiae_C368-T07_good_1446.050
SRR6049657Rhizomagastrodiae_C368-T07_good_1331.930
SRR6049658Rhizomagastrodiae_C368-T04_good_1331.750
SRR6049659Rhizomagastrodiae_C368-T04_good_1287.670
SRR6049660Rhizomagastrodiae_C368-T01_good_1431.750
SRR6049661Rhizomagastrodiae_C368-T04_good_1386.810
SRR6049662Rhizomagastrodiae_C368-T01_good_1616.420
SRR6049663Rhizomagastrodiae_C368-T01_good_1554.710
SRR6049664Rhizomagastrodiae_C368-T10_good_1611.960
SRR6049665Rhizomagastrodiae_C368-T10_good_1611.960
SRP279888GastroGastrodia elata tuber 406.26
JuvenJuvenile tuber728.28
Mother_GastroMother tuber of Gastrodia elata 352.36
Mother_JuvenMother tuber of Juvenile 395.34