Gene detail

Detail information of GWHGAAEX006424/evm.TU.scaffold_181.17

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743757078\|ref\|XP_010920169.1\|	6.41E-64	PREDICTED: uncharacterized protein LOC105044068 [Elaeis guineensis]
trEMBL	tr\|M0TXZ9\|M0TXZ9_MUSAM	9.00E-57	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P06400_001}
TAIR	AT2G30990	3.00E-39	Protein of unknown function (DUF688)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000177	979019	982027	+

Transcript Sequence
>GWHTAAEX006424 AAATTTCCCACCACCATGCTCGCTTCCCTAGTAGTGAGAAAATCAACTCGACTATGAAGTCGAAGCAAACCTTCCGGTCGTAAAGCGGAAGAAAAGCTTCCACATTTCGCAAATTCTTGCCGAAATTCTTGCTTTCAAGCAGCAACGAGAAGCTCCCAGCAACACGATTGCTTCTCCTCCTTTCTCGGCGTCAAAAGGATACCTACAATCGTCGCTGGCCATGCTATTGGACATTCTGGATTAGGGTTTTTTTTTTTTCTCATTACCCCAGTACTTGGCACCGCAAACGGGAGCGACACGATGCAGCAGAGCTTGACGGAAGATAAGCGTCTCGATCTTAATCTTCCTCTGCTCTCCGCGCGGCGCCATTCGGTTCCACTGACGGCCAAATTCTCAACTTATTCGCAAGAAACGAAAGAGAAGCCAACAACGCCTTCATGGCTATCCGCCGTTCCGAACTACAAGTCTGATCTTAAATCTGGTCCCTTGCGGAATCCCGGAGCTGTCCCCTTTGTCTGGGAGCAAAAACCAGGCCAGCCTAAGACCGGCGCGGCCCCTCGCAGTTGCCTGCCGCCTGTCCCTTCCCTTCCGCCTGGACGAAATCCATATGACCCATCGGAGGAGCTTCTGAAGGTGAAGGAGGAGGACGAAGATGACTTTGCAGACGCAGTCGATGCTCTGTCACTCACCGAATCCTTCTCCATGGACTGCAGCCTCAGCGGTATCAGCGGCATTCCGGATGTTGTCTTGCCTTATGAAAGATTTTCCAAGGATCCGCATATCAAGGAGTTGATGATGGACCGCTTCCTTCCTGCAGCCCAGGCGTTGGCCACTGGCTCTCCTCAGTGCTTACAAAGGAAGCCAGTGAAACCGGCTGATAGGGTTGGAGAGAATAGGGTCGGCAGGGAACGTCTTCCTTATCAACACAGGCCGAATTTTGTTGCCCGATATCCTCGCGATGAAATCGGAAATTCTGATAATGACAACGATGATGATTATGGTAATAATTATGAGGGTGGTTTCGGACGTTTTATCTCGAAGGCTTGCGGGCTTCTACCTCAGCTCTGCCTGAGGAGTTCACTTTGTCTCTTAAATCCAATGCCTGGGATTAAAAAAGTTGGAGGCCAGCGAAGTGCACTTATGCCCCCATCAACATCTCGGAAGATTTGCAGTGCCATGGGCAATGATGCACAACTTGCAAAGGCTGAGGATGAGCTATGGGAAGCGGTATTTAAGCACAAGCTGAGGCTTGGGATCACTGATAAAGGGGAGAGCGGAAGCAGGAGCACAACTATGTCGAACAGGCAGGGGCAGTGGAGTGATTCACAGACATTGGATGAATCTACTTCTTGCTGTCATTCTGGAGGCAGCGGGGAAACTCTTGTTGAAACTGTTAAGAGGGATATGAAGGATGGTAAAAGTGAAGGGTCTGAGTCTCTTGATAGAGATGGGGAAAGGTATTGGGGAATGAGTCCTAGCCATGTAAGTCAGCAGGGATCTTGTACTCCGAGTCCCACAGTGGCGAATTCTATTGATGTCACTTCGGGAAGTCTTCCAGGAAATCCATATTCTTCTAAGCACAGTTCTACTGACAGTGAGATAGGTTATAGAGCCCCAAAAGAAACAACTATATCTGCAAATGCTTTTTTTCAGGATACGGCAGATGACCAGAAAATTGAAGAGAAGGCTACGCTAGAAAGTCGTGAAGGGTTTGAGCTGCAGCCTCAATCATCTGAGTTATGCCAGAGTGGTTCAATTCTTTGCTCTGGAAGAAGTCCTATAGCTAATTGCAAGAATGATTCTGCACTTGTAAAAATGGAAGATCAATCAAAGGCTGATGCAAATTTACACTTCCTTCTCCCTCCTCCCTTGCCGAAAACACCATCTGAATCCTGGCTATCGCGCACCTTGCCTTACATATCAGCAAAATTTCCATCAGGGCATCCAAGTTTAGGCATGCATATTCTAAAGAGGAAGCACGGCATTGATTCATCCTGCACTTCTCTTAAGCCTGAGAGTGATCCTAAGCCATTAGAATTACTACATCCACAAGTAACTTGTGTTGTTGCAAAACAGAAAATCCCTTCGGAGCCTTCCAAGCTACGCCAATGTCAGAGAAAGTTAATTGATCACCATGAAGAAAGCCACAGTAAACCTTCTGAACCACAAAATGATCCAATACATAGCATTAAGCCTACAAAACCGTCGAAACGCCAAATTCGCTTTTCAGATGTTCTCACTACACCTATATCTCCTCCACGGTCTGAAATGTGAATAGTATGTAGATAATCTTCCTTCTGCAGCTTCATTAATATTCTCCAACTCAAGATTTTATCTCCTAATATTGTATGAGGTATTGTACCTCTTTCTATTATGCCCACTCCAAGTTTGTGGGATAAGGCTAGTAATGATGAGATGATGATTATAACTTGCACAAGGACTTACCTTGTTTTTTATATGTATTTGCTTTTTTATTACTTCAATGTTAGGTAGCCAGATGCCATCTTCTGGTTATCCTTGTTATTTTTTCATGAAACAAATGTATAAATTTTTTTCAATCTGAATGTATTTATAGGTGATGCCATGTGTGAATTTAATGTATAAAGAGATGCTTCATCAAACAGAAAGTTCCCATAGTTTTATGGTAAATCTGTGTTCTCTGTTACTAGCATAAGGATTAATAATGGTGTTGCGATTCTTGTGTTTTGTGGCTTTTTAATTTCAAAATGCTTAGAATATATCTTGTATATTTCTTATTTCACTAGTGGTATCATTAACTTTTCTGTTACTATGTTTCCAAATTTTTCATTACATTATGAGTTTGTC

Network for GWHGAAEX006424

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05097.11	DUF688	7	356	1.80E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.930
SRP064423	SRR2545915	Juvenile tuber	5.330
SRP108465	SRR5643513	five period of Gastrodia elata	7.830
	SRR5643514	five period of Gastrodia elata	8.300
	SRR5643515	five period of Gastrodia elata	8.150
	SRR5643524	five period of Gastrodia elata	7.960
	SRR5643525	five period of Gastrodia elata	6.880
	SRR5643528	five period of Gastrodia elata	6.530
	SRR5643658	five period of Gastrodia elata	7.240
	SRR5643659	five period of Gastrodia elata	7.870
	SRR5643660	five period of Gastrodia elata	7.210
	SRR5643661	five period of Gastrodia elata	7.200
	SRR5643662	five period of Gastrodia elata	9.570
	SRR5643663	five period of Gastrodia elata	8.090
	SRR5643664	five period of Gastrodia elata	9.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.780
SRP279888	Gastro	Gastrodia elata tuber	7.13
	Juven	Juvenile tuber	8.73
	Mother_Gastro	Mother tuber of Gastrodia elata	8.65
	Mother_Juven	Mother tuber of Juvenile	7.30