Gene detail

Detail information of GWHGAAEX006429/evm.TU.scaffold_181.26

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|194336180\|ref\|YP_002017974.1\|	9.00E-25	serine/threonine protein kinase [Pelodictyon phaeoclathratiforme BU-1]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|695046274\|ref\|XP_009410960.1\|	0	PREDICTED: probable receptor-like protein kinase At2g42960 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SJG2\|Y2296_ARATH	0	Probable receptor-like protein kinase At2g42960
trEMBL	tr\|K3ZSF7\|K3ZSF7_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si029537m}
TAIR	AT3G59110	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000177	1443926	1456884	+

Transcript Sequence
>GWHTAAEX006429 GGACTTTTTCCGAGCTTAAACTGGTATTTTTTTTCCTCTGATCCGCGTTCTTGAAATTTTAAATGTTGGTTTTCTTATGCCAATGTCATAATAAGATGGCAGATTCTCTTGTTTTTGATTTCTGTAAACTTAAGCCAAATCTAAATCAGCATCGTTTTGTGGTCTATTTACAGCTTTTTCTTAACAAGCTACTGCAAAAAATGGTTTTTTTTCTCACAGAGTGTTCTCTGAGAAATAATTTTTTCACTACGAAGTGCAAAACTATGTCATCAAAAGATGCTCTAACTATCCATCTGAACCATAAGACCTTCCTTGGTCTGAGACTATGGGAGGTGATTTCCATATTCTGCGCTGCCTTCTTAACACTTGTTCTCATGATCCTTTCCATCATCTCATTACGGAGGAAATCTAACTGTAAATCAAACCCGGACAAGCTTCCCCACACTCAAATCCCAGACATTTCCAAGGAAATAACAGTCGACAGAGTTGCCGGCCGCACATTAGCACAGAGCTTCAGTGATCATGAAGGGCCTGTGCTTGAGAGGTTTAGTGACAATGATTCCCGCAAAATGCTGATTCATATGGCTACCAAGTCCAGTGATGCGGATACAGCGAGCCAGTGCAGTTGGGCTCTCTGCGAAAAGACCGGAAGCTCGTATTCAGGGGAAGAGGGGAGCTCAAATGCAAGGATTGCATCTGTTTCTTCTCCTTTGGTTGGACTTCCTGGGCTCTCGCATGTAGGATGGGGGCATTGGTTCACTCTGAGGGACCTTGAGCTAGCCACGAATTGCTTCTCCAAGGAGAATGTTATTGGGGAGGGAGGCTATGGAGTTGTGTTCTGCGGCCGTTTGACAAACGGAGCCGAGGTTGCTATTAAGAAAATTCTTAACAATATGGGCCAAGCGGAGAAAGAATTTAGGGTGGAAGTGGAGGCCATTGGCAATGTTCGGCATAAGAATCTTGTGCGGCTTTTGGGTTATTGCGTGGAAGGGATTCACAGGATGCTTGTTTATGAATATGTGAACAATGGTAATTTGGAGCAGTGGCTTCATGGGGCCATGCGCCAGCATGGAGTTCTCAAGTTGGGAATCACGAATGAAAGTTATCTTAGGCACAGCAAAGGCTTAAGTGCTGATTTTTTTTTCAAACTTGCTTATTTACATGAGGGCATTGAACCGAAGGTTGTTCATAGAGATATAAAATCAAGCAACATTCTAATAGATAATGATTTTAGTGGCAAGGTCTCTGATTTTGGATTGGCCAAGCTCTTGGGTTCTGGTAAAAGCCATATCACAACAAGGGTGATGGGAACATTTGGATATGTTGCTCCAGAATATGCTAATACTGGGATGCTAAATGAGAAGAGTGATGTTTATAGCTTTGGAGTGCTTCTCTTGGAATCTGTGACAGGTAGAGATCCTGTGGATTACAGCCGACCTGCAAATGAGGTAAATCTTGTGGAGTGGATAAAATTAATGTTGGGCAGCAGGAGATCTGAAGAACTTGTTGATCCAACCATGGAGTTGCAACCTTCATCTAAAGCCCTTAAAATGGCACTCCTAGCTGGTTTAAAATGTGTTGATCCAGATTCGGGGAAGAGACCCAAGATGGGACAAGTTGTCAGACTGCTTGAAACTGAAGAGTGTCCATTTCGCGAGGAATGGAGAAGCCGTCGGAACCATAATACAAGGAGTTTGGAGATTTCTGCCAGGGATGGATCGAGCTCCGTAGATCTTGATGGTCAAG

Network for GWHGAAEX006429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	245	520	4.00E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.280
SRP064423	SRR2545915	Juvenile tuber	9.920
SRP108465	SRR5643513	five period of Gastrodia elata	4.000
	SRR5643514	five period of Gastrodia elata	6.380
	SRR5643515	five period of Gastrodia elata	6.860
	SRR5643524	five period of Gastrodia elata	6.370
	SRR5643525	five period of Gastrodia elata	5.220
	SRR5643528	five period of Gastrodia elata	3.990
	SRR5643658	five period of Gastrodia elata	4.640
	SRR5643659	five period of Gastrodia elata	9.140
	SRR5643660	five period of Gastrodia elata	7.900
	SRR5643661	five period of Gastrodia elata	9.590
	SRR5643662	five period of Gastrodia elata	6.330
	SRR5643663	five period of Gastrodia elata	7.960
	SRR5643664	five period of Gastrodia elata	10.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.000
SRP279888	Gastro	Gastrodia elata tuber	7.26
	Juven	Juvenile tuber	5.05
	Mother_Gastro	Mother tuber of Gastrodia elata	3.36
	Mother_Juven	Mother tuber of Juvenile	3.43