Detail information of GWHGAAEX006430/evm.TU.scaffold_181.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|387789964|ref|YP_006255029.1|8.00E-171ribonucleotide reductase subunit beta [Solitalea canadensis DSM 3403]
KOGKOG15670Ribonucleotide reductase, beta subunit
nrgi|356558708|ref|XP_003547645.1|0PREDICTED: ribonucleoside-diphosphate reductase small chain [Glycine max]
Swissprottr|P49730|RIR2_TOBAC0Ribonucleoside-diphosphate reductase small chain
trEMBLtr|V7D141|V7D141_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34896.1}
TAIRAT3G270600Ferritin/ribonucleotide reductase-like family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017714680431469077+
Transcript Sequence

Network for GWHGAAEX006430

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00268.20Ribonuc_red_sm292961.70E-118
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10808RRM2 Metabolic pathways map01100
Purine metabolismmap00230
Pyrimidine metabolismmap00240
Glutathione metabolismmap00480
Drug metabolism - other enzymesmap00983
p53 signaling pathwaymap04115

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0009263Biological Processdeoxyribonucleotide biosynthetic process
GO:0004748Molecular Functionribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO:0005515Molecular Functionprotein binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0005971Cellular Componentribonucleoside-diphosphate reductase complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.550
SRR2545915Juvenile tuber7.540
SRP108465SRR5643513five period of Gastrodia elata19.560
SRR5643514five period of Gastrodia elata12.460
SRR5643515five period of Gastrodia elata11.560
SRR5643524five period of Gastrodia elata11.530
SRR5643525five period of Gastrodia elata15.480
SRR5643528five period of Gastrodia elata15.860
SRR5643658five period of Gastrodia elata10.830
SRR5643659five period of Gastrodia elata9.770
SRR5643660five period of Gastrodia elata11.360
SRR5643661five period of Gastrodia elata8.040
SRR5643662five period of Gastrodia elata6.690
SRR5643663five period of Gastrodia elata8.750
SRR5643664five period of Gastrodia elata7.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.710
SRR6049655Rhizomagastrodiae_C368-T10_good_132.350
SRR6049656Rhizomagastrodiae_C368-T07_good_137.410
SRR6049657Rhizomagastrodiae_C368-T07_good_120.470
SRR6049658Rhizomagastrodiae_C368-T04_good_115.760
SRR6049659Rhizomagastrodiae_C368-T04_good_111.340
SRR6049660Rhizomagastrodiae_C368-T01_good_120.400
SRR6049661Rhizomagastrodiae_C368-T04_good_128.010
SRR6049662Rhizomagastrodiae_C368-T01_good_155.120
SRR6049663Rhizomagastrodiae_C368-T01_good_132.130
SRR6049664Rhizomagastrodiae_C368-T10_good_142.940
SRR6049665Rhizomagastrodiae_C368-T10_good_142.940
SRP279888GastroGastrodia elata tuber 6.62
JuvenJuvenile tuber4.35
Mother_GastroMother tuber of Gastrodia elata 10.54
Mother_JuvenMother tuber of Juvenile 5.26