Detail information of GWHGAAEX006433/evm.TU.scaffold_181.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|502112893|ref|XP_004494477.1| | 3.30E-76 | PREDICTED: probable WRKY transcription factor 47-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9XEC3|WRK42_ARATH | 1.00E-59 | Probable WRKY transcription factor 42 |
| trEMBL | tr|A0A072U5P6|A0A072U5P6_MEDTR | 2.00E-69 | WRKY1b transcription factor {ECO:0000313|EMBL:KEH24448.1} |
| TAIR | AT4G04450 | 3.00E-59 | WRKY family transcription factor |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000177 | 1584528 | 1589390 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006433
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03106.14 | WRKY | 140 | 197 | 2.70E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | WRKY |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.140 |
| SRR2545915 | Juvenile tuber | 1.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.730 |
| SRR5643514 | five period of Gastrodia elata | 1.760 | |
| SRR5643515 | five period of Gastrodia elata | 0.620 | |
| SRR5643524 | five period of Gastrodia elata | 0.300 | |
| SRR5643525 | five period of Gastrodia elata | 2.440 | |
| SRR5643528 | five period of Gastrodia elata | 2.000 | |
| SRR5643658 | five period of Gastrodia elata | 3.400 | |
| SRR5643659 | five period of Gastrodia elata | 2.100 | |
| SRR5643660 | five period of Gastrodia elata | 3.000 | |
| SRR5643661 | five period of Gastrodia elata | 2.130 | |
| SRR5643662 | five period of Gastrodia elata | 1.110 | |
| SRR5643663 | five period of Gastrodia elata | 0.500 | |
| SRR5643664 | five period of Gastrodia elata | 1.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.350 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.34 |
| Juven | Juvenile tuber | 0.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.54 | |
| Mother_Juven | Mother tuber of Juvenile | 0.47 |