Detail information of GWHGAAEX006434/evm.TU.scaffold_181.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427714129|ref|YP_007062753.1|7.00E-2150S ribosomal protein L31 [Synechococcus sp. PCC 6312]
nrgi|743758315|ref|XP_010926158.1|3.42E-46PREDICTED: 50S ribosomal protein L31, chloroplastic [Elaeis guineensis]
Swissprottr|Q9FWS4|RK31_ARATH1.00E-3850S ribosomal protein L31, chloroplastic (Precursor)
trEMBLtr|M0SK41|M0SK41_MUSAM9.00E-4650S ribosomal protein L31 {ECO:0000256|RuleBase:RU000564}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017715908331605971-
Transcript Sequence

Network for GWHGAAEX006434

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01197.17Ribosomal_L312182822.20E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02909RP-L31, rpmE Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms75.750
SRR2545915Juvenile tuber57.230
SRP108465SRR5643513five period of Gastrodia elata39.440
SRR5643514five period of Gastrodia elata38.010
SRR5643515five period of Gastrodia elata36.020
SRR5643524five period of Gastrodia elata36.770
SRR5643525five period of Gastrodia elata35.820
SRR5643528five period of Gastrodia elata36.470
SRR5643658five period of Gastrodia elata47.860
SRR5643659five period of Gastrodia elata59.230
SRR5643660five period of Gastrodia elata69.290
SRR5643661five period of Gastrodia elata76.020
SRR5643662five period of Gastrodia elata85.030
SRR5643663five period of Gastrodia elata79.590
SRR5643664five period of Gastrodia elata96.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.620
SRR6049655Rhizomagastrodiae_C368-T10_good_148.820
SRR6049656Rhizomagastrodiae_C368-T07_good_135.830
SRR6049657Rhizomagastrodiae_C368-T07_good_131.860
SRR6049658Rhizomagastrodiae_C368-T04_good_163.570
SRR6049659Rhizomagastrodiae_C368-T04_good_171.850
SRR6049660Rhizomagastrodiae_C368-T01_good_156.020
SRR6049661Rhizomagastrodiae_C368-T04_good_152.210
SRR6049662Rhizomagastrodiae_C368-T01_good_140.180
SRR6049663Rhizomagastrodiae_C368-T01_good_154.010
SRR6049664Rhizomagastrodiae_C368-T10_good_137.410
SRR6049665Rhizomagastrodiae_C368-T10_good_137.410
SRP279888GastroGastrodia elata tuber 41.81
JuvenJuvenile tuber44.73
Mother_GastroMother tuber of Gastrodia elata 23.37
Mother_JuvenMother tuber of Juvenile 25.66