Detail information of GWHGAAEX006443/evm.TU.scaffold_182.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284037294|ref|YP_003387224.1| | 5.00E-156 | biotin synthase [Spirosoma linguale DSM 74] |
| KOG | KOG2900 | 0 | Biotin synthase |
| nr | gi|743814902|ref|XP_010930184.1| | 0 | PREDICTED: biotin synthase [Elaeis guineensis] |
| Swissprot | tr|P54967|BIOB_ARATH | 0 | Biotin synthase |
| trEMBL | tr|A0A061ERL3|A0A061ERL3_THECC | 0 | Radical SAM superfamily protein {ECO:0000313|EMBL:EOY07017.1} |
| TAIR | AT2G43360 | 0 | Radical SAM superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000179 | 845239 | 874727 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006443
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04055.20 | Radical_SAM | 84 | 242 | 1.30E-14 |
| PF06968.12 | BATS | 256 | 346 | 2.80E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01012 | bioB | Metabolic pathways | map01100 |
| Biotin metabolism | map00780 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009102 | Biological Process | biotin biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
| GO:0004076 | Molecular Function | biotin synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.830 |
| SRR2545915 | Juvenile tuber | 22.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.920 |
| SRR5643514 | five period of Gastrodia elata | 24.040 | |
| SRR5643515 | five period of Gastrodia elata | 20.600 | |
| SRR5643524 | five period of Gastrodia elata | 23.380 | |
| SRR5643525 | five period of Gastrodia elata | 21.840 | |
| SRR5643528 | five period of Gastrodia elata | 20.990 | |
| SRR5643658 | five period of Gastrodia elata | 19.600 | |
| SRR5643659 | five period of Gastrodia elata | 26.670 | |
| SRR5643660 | five period of Gastrodia elata | 21.480 | |
| SRR5643661 | five period of Gastrodia elata | 25.340 | |
| SRR5643662 | five period of Gastrodia elata | 21.850 | |
| SRR5643663 | five period of Gastrodia elata | 22.790 | |
| SRR5643664 | five period of Gastrodia elata | 19.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.58 |
| Juven | Juvenile tuber | 23.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.17 | |
| Mother_Juven | Mother tuber of Juvenile | 18.34 |