Detail information of GWHGAAEX006446/evm.TU.scaffold_182.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29763.00E-134Protein involved in autophagy and nutrient starvation
nrgi|672112264|ref|XP_008804842.1|1.83E-147PREDICTED: autophagy protein 5 isoform X3 [Phoenix dactylifera]
Swissprottr|Q9FFI2|ATG5_ARATH1.00E-134Autophagy protein 5
trEMBLtr|A0A068TZK9|A0A068TZK9_COFCA4.00E-136Autophagy protein 5 {ECO:0000256|RuleBase:RU361202}
TAIRAT5G172903.00E-134autophagy protein Apg5 family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017912364781305637+
Transcript Sequence

Network for GWHGAAEX006446

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04106.11APG51163433.40E-59
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08339ATG5 Autophagy - animal map04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Mitophagy - animalmap04137
Ferroptosismap04216
NOD-like receptor signaling pathwaymap04621
RIG-I-like receptor signaling pathwaymap04622
Longevity regulating pathwaymap04211
Longevity regulating pathway - multiple speciesmap04213

Gene Ontology

GO term OntologyName
GO:0006914Biological Processautophagy
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.880
SRR2545915Juvenile tuber34.980
SRP108465SRR5643513five period of Gastrodia elata12.010
SRR5643514five period of Gastrodia elata9.710
SRR5643515five period of Gastrodia elata9.900
SRR5643524five period of Gastrodia elata11.190
SRR5643525five period of Gastrodia elata18.960
SRR5643528five period of Gastrodia elata21.610
SRR5643658five period of Gastrodia elata24.090
SRR5643659five period of Gastrodia elata11.270
SRR5643660five period of Gastrodia elata10.150
SRR5643661five period of Gastrodia elata8.980
SRR5643662five period of Gastrodia elata11.370
SRR5643663five period of Gastrodia elata13.090
SRR5643664five period of Gastrodia elata9.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.410
SRR6049655Rhizomagastrodiae_C368-T10_good_116.360
SRR6049656Rhizomagastrodiae_C368-T07_good_123.280
SRR6049657Rhizomagastrodiae_C368-T07_good_120.130
SRR6049658Rhizomagastrodiae_C368-T04_good_129.860
SRR6049659Rhizomagastrodiae_C368-T04_good_128.100
SRR6049660Rhizomagastrodiae_C368-T01_good_127.380
SRR6049661Rhizomagastrodiae_C368-T04_good_127.050
SRR6049662Rhizomagastrodiae_C368-T01_good_132.200
SRR6049663Rhizomagastrodiae_C368-T01_good_133.760
SRR6049664Rhizomagastrodiae_C368-T10_good_120.730
SRR6049665Rhizomagastrodiae_C368-T10_good_120.730
SRP279888GastroGastrodia elata tuber 27.14
JuvenJuvenile tuber17.49
Mother_GastroMother tuber of Gastrodia elata 18.28
Mother_JuvenMother tuber of Juvenile 11.63