Detail information of GWHGAAEX006451/evm.TU.scaffold_183.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186683200|ref|YP_001866396.1| | 1.00E-16 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| KOG | KOG0027 | 2.00E-78 | Calmodulin and related proteins (EF-Hand superfamily) |
| nr | gi|672164222|ref|XP_008801980.1| | 2.40E-89 | PREDICTED: probable calcium-binding protein CML14 [Phoenix dactylifera] |
| Swissprot | tr|Q6L5F4|CML14_ORYSJ | 9.00E-80 | Probable calcium-binding protein CML14 |
| trEMBL | tr|M0U2E5|M0U2E5_MUSAM | 5.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21860_001} |
| TAIR | AT1G18530 | 2.00E-78 | EF hand calcium-binding protein family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000182 | 727072 | 727560 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006451
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13499.5 | EF-hand_7 | 11 | 71 | 6.90E-10 |
| PF13499.5 | EF-hand_7 | 85 | 147 | 9.50E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.590 |
| SRR2545915 | Juvenile tuber | 15.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.220 |
| SRR5643514 | five period of Gastrodia elata | 23.190 | |
| SRR5643515 | five period of Gastrodia elata | 32.460 | |
| SRR5643524 | five period of Gastrodia elata | 25.280 | |
| SRR5643525 | five period of Gastrodia elata | 25.350 | |
| SRR5643528 | five period of Gastrodia elata | 8.850 | |
| SRR5643658 | five period of Gastrodia elata | 8.510 | |
| SRR5643659 | five period of Gastrodia elata | 23.020 | |
| SRR5643660 | five period of Gastrodia elata | 8.650 | |
| SRR5643661 | five period of Gastrodia elata | 20.030 | |
| SRR5643662 | five period of Gastrodia elata | 44.130 | |
| SRR5643663 | five period of Gastrodia elata | 20.680 | |
| SRR5643664 | five period of Gastrodia elata | 51.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 69.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 121.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 64.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 54.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 83.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 83.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.68 |
| Juven | Juvenile tuber | 16.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 56.90 | |
| Mother_Juven | Mother tuber of Juvenile | 18.49 |