Gene detail

Detail information of GWHGAAEX006458/evm.TU.scaffold_183.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|392397796\|ref\|YP_006434397.1\|	2.00E-09	DNA-methyltransferase Dcm [Flexibacter litoralis DSM 6794]
nr	gi\|672187579\|ref\|XP_008813372.1\|	0	PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Phoenix dactylifera]
Swissprot	tr\|Q9M548\|DRM2_ARATH	0	DNA (cytosine-5)-methyltransferase DRM2
trEMBL	tr\|B4XTT0\|B4XTT0_ELAGV	0	DRM-type DNA-methyltransferase {ECO:0000313\|EMBL:ABW96890.1}
TAIR	AT5G14620	2.00E-170	domains rearranged methyltransferase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000182	1459036	1497412	-

Transcript Sequence
>GWHTAAEX006458 TCTCTCTCTCTCTCTCTTTCTATAAGAACGCACAAAGCCCATTGTCACCCTCTCAAAACCCCCTTTCGTGTCGGAGAGGGGCTTGTGGTTCGGTTATTCGGTCTTTGTTCCGTCAAGTTTCTTTAATTAGATTCGTATTCCGTGACGACAGAAGCTCGCTTAGACTCCGAGAAGTTCTTGTAGAAGGAGATGGTAGATGACGATTATAATGACGATTTCAGTTGGGAGAGTGATGACGATGAGAAGGAAAATCAAACCGGAACTTCTGGGGAGGCACACGAAGCAGGACCTTCTCAGCCCAGCTTGTATTCCCATTTCATTGCTATGGGATTCTCAAAAGACATGGTTGAAAAGGAGATTGAGAAAAATGGAGAAGGAAATTCAGAGGTCATTCTAGAAGCTCTACTCGCTTATACGGCTATTGATAATCCTTCTTTAGAAAATGAGTATGACTCAATTGAGTGTTCAACAGCTAGTGATGTTGATGGCATAAACTATGATTCTTGGGAATCCGATGACTCTGGTTATCAGGACTTCATAGCTACTCTCCCAGAAAAAGACAATAAATTGTTGACACTTGTAGAAATGGGCTTTTCCTCTGAGGAGGCATCAGCGGCTATAGACAGATGTGGCAAGAAATCTTCAGTTCTGGAGGTTGTGAACTCAATTCATGCCGCTCAAATGGCCAAGGAATCTGGTGAAATAGCTTGGATATCTTCAGAATTTGCTACTCCATCTGAAGGCTCATTTTACAGCGTCAGTAGGAAGAAGAGGAGGCTAGTGGAAGAAAAATGCAAGCACAGAAGGAGAGGAAACTATTTTAAGAAGGACGCTGCTGCTTTGGATGCTGATCAAGTACCCATGACAATTCCCAGGACAATGACTGGATTTAGCCTCCCATTCCAGAAATGCGTCACTCGTAGAAACCTCCCTGAGGCTGCCCTCAGCCCCCCTTATTTCTACTATGAGAATGTTGCTCTGACTCCCAAGGGAGTTTGGGACACAATCTCCCGTTTCCTCTACGACATCGACCCCGAGTTCGTTGACTCAAAGTACTTCTGCGCTACAGCTCGTAAGAGGGCTTACGTCCATAATCTCCCCATTGAGAACCGATTTCCTCTCCTCCCCATTCCCAAAAAGACCATTCAGGAAGTATTGTCCACCACAAAGAAGTGGTGGCCTGAATGGGACAAGAGAACCCAGTTAAACTGTCTGCAGACCTGTACTGCCAGCGCTAAGTTAACTGAGAGGATCAGAAAGGCTTTGGAAGGCTGTGGAGATCTTCAGCCCTCCGTAAAAGTTCAGGAATATGTGATGTACGAATGCAGGAAGTGGAATCTCGTCTGGGTCGGCCGCCACAAAGCAGCTCCATTGGAGCCCGATGAAATAGAAACGCTACTCGGGTTTCCGAAGAATCACACTCGGGGTGGAGGCATCAGCCGCACAGAGCGGTTCAAGTCATTGGGAAACTCGTTCCAGGTTGATACTGTCGCTTATCACCTCTCCGTTCTGAAAAGCTTGTTCCCCAACGGGATCAATGTCTTGTCTCTTTTTACTGGCATTGGCGGGGCCGAAGTGGCCCTTCAAAAATTGGGCATCCCTCTGAGGGCCGTCCTCTCTGTCGAGATATCTGAGGCTAATAGGAACATATTGAGGAGCTGGTGGGAGCAGACGAGCCAGGAGGGGGTTCTGATAGATGTCAATGACGTGCAGAAGGTCAGTAGTGATATGGTCAAGCAATTCATCAATAAATATGGAGATTTCGATCTGGTTATCGGGGGGAGCCCCTGCAACAACCTCACGGGGAGCAACCGCCGCACGAGGGATGGCCTCGAAGGTAAGGATTCTTCCCTCTTCTTTGAATTTTTTCGTATAGTTGACCTCGTGAAATGTATCATGGGGAATAAGTTTTGACCGGAGTGTGGCCGGAATGGTTTAATGTAACCAACAGCTGTTACAGAAATGTTAGTGTTCTTGTTTGTTTGTACTCTTTTTGACCGTTGATTCTTTTGTCCCTCCCACCTGCGCATATATTCACTTTAGCACTCATTCATCTCTTAGTCACTTTGCAAACA

Network for GWHGAAEX006458

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00145.16	DNA_methylase	450	564	1.60E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006306	Biological Process	DNA methylation
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.070
SRP064423	SRR2545915	Juvenile tuber	0.540
SRP108465	SRR5643513	five period of Gastrodia elata	0.760
	SRR5643514	five period of Gastrodia elata	1.270
	SRR5643515	five period of Gastrodia elata	0.210
	SRR5643524	five period of Gastrodia elata	1.380
	SRR5643525	five period of Gastrodia elata	0.220
	SRR5643528	five period of Gastrodia elata	0.150
	SRR5643658	five period of Gastrodia elata	0.170
	SRR5643659	five period of Gastrodia elata	0.340
	SRR5643660	five period of Gastrodia elata	0.540
	SRR5643661	five period of Gastrodia elata	0.650
	SRR5643662	five period of Gastrodia elata	0.710
	SRR5643663	five period of Gastrodia elata	0.770
	SRR5643664	five period of Gastrodia elata	0.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.000
SRP279888	Gastro	Gastrodia elata tuber	2.85
	Juven	Juvenile tuber	2.29
	Mother_Gastro	Mother tuber of Gastrodia elata	0.61
	Mother_Juven	Mother tuber of Juvenile	1.00