Detail information of GWHGAAEX006459/evm.TU.scaffold_183.23_evm.TU.scaffold_183.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307152348|ref|YP_003887732.1|2.00E-15APHP domain-containing protein [Cyanothece sp. PCC 7822]
KOGKOG00450Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily)
nrgi|672159163|ref|XP_008799338.1|0PREDICTED: LOW QUALITY PROTEIN: calpain-type cysteine protease ADL1-like [Phoenix dactylifera]
Swissprottr|Q6ZFZ4|DEK1_ORYSJ0Calpain-type cysteine protease ADL1 (Precursor)
trEMBLtr|M5W795|M5W795_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ09612.1}
TAIRAT1G553500calpain-type cysteine protease family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018215829171661940+
Transcript Sequence

Network for GWHGAAEX006459

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00648.20Peptidase_C2170820071.60E-88
PF01067.21Calpain_III201921564.00E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0004198Molecular Functioncalcium-dependent cysteine-type endopeptidase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.480
SRR2545915Juvenile tuber12.420
SRP108465SRR5643513five period of Gastrodia elata6.950
SRR5643514five period of Gastrodia elata7.410
SRR5643515five period of Gastrodia elata7.300
SRR5643524five period of Gastrodia elata6.970
SRR5643525five period of Gastrodia elata8.750
SRR5643528five period of Gastrodia elata5.380
SRR5643658five period of Gastrodia elata6.770
SRR5643659five period of Gastrodia elata8.440
SRR5643660five period of Gastrodia elata9.570
SRR5643661five period of Gastrodia elata8.380
SRR5643662five period of Gastrodia elata7.580
SRR5643663five period of Gastrodia elata8.520
SRR5643664five period of Gastrodia elata9.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.800
SRR6049655Rhizomagastrodiae_C368-T10_good_16.450
SRR6049656Rhizomagastrodiae_C368-T07_good_18.950
SRR6049657Rhizomagastrodiae_C368-T07_good_18.860
SRR6049658Rhizomagastrodiae_C368-T04_good_110.060
SRR6049659Rhizomagastrodiae_C368-T04_good_110.830
SRR6049660Rhizomagastrodiae_C368-T01_good_19.450
SRR6049661Rhizomagastrodiae_C368-T04_good_111.190
SRR6049662Rhizomagastrodiae_C368-T01_good_19.640
SRR6049663Rhizomagastrodiae_C368-T01_good_19.590
SRR6049664Rhizomagastrodiae_C368-T10_good_17.500
SRR6049665Rhizomagastrodiae_C368-T10_good_17.500
SRP279888GastroGastrodia elata tuber 9.90
JuvenJuvenile tuber10.65
Mother_GastroMother tuber of Gastrodia elata 8.71
Mother_JuvenMother tuber of Juvenile 13.30