Detail information of GWHGAAEX006462/evm.TU.scaffold_184.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17624.00E-3760s acidic ribosomal protein P1
nrgi|225426544|ref|XP_002279082.1|2.21E-36PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
Swissprottr|P52855|RLA1_MAIZE1.00E-2860S acidic ribosomal protein P1
trEMBLtr|D7TVT2|D7TVT2_VITVI8.00E-37Putative uncharacterized protein {ECO:0000313|EMBL:CBI34607.3}
TAIRAT5G245104.00E-3760S acidic ribosomal protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001803193734211-
Transcript Sequence

Network for GWHGAAEX006462

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00428.18Ribosomal_60s221115.00E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02942RP-LP1, RPLP1 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006414Biological Processtranslational elongation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms198.930
SRR2545915Juvenile tuber253.500
SRP108465SRR5643513five period of Gastrodia elata250.070
SRR5643514five period of Gastrodia elata290.030
SRR5643515five period of Gastrodia elata276.580
SRR5643524five period of Gastrodia elata294.890
SRR5643525five period of Gastrodia elata174.460
SRR5643528five period of Gastrodia elata178.690
SRR5643658five period of Gastrodia elata169.030
SRR5643659five period of Gastrodia elata210.750
SRR5643660five period of Gastrodia elata193.580
SRR5643661five period of Gastrodia elata221.010
SRR5643662five period of Gastrodia elata207.480
SRR5643663five period of Gastrodia elata197.720
SRR5643664five period of Gastrodia elata201.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1175.420
SRR6049655Rhizomagastrodiae_C368-T10_good_191.490
SRR6049656Rhizomagastrodiae_C368-T07_good_1197.530
SRR6049657Rhizomagastrodiae_C368-T07_good_1175.970
SRR6049658Rhizomagastrodiae_C368-T04_good_1167.330
SRR6049659Rhizomagastrodiae_C368-T04_good_1144.500
SRR6049660Rhizomagastrodiae_C368-T01_good_1186.850
SRR6049661Rhizomagastrodiae_C368-T04_good_1176.740
SRR6049662Rhizomagastrodiae_C368-T01_good_1216.840
SRR6049663Rhizomagastrodiae_C368-T01_good_1200.440
SRR6049664Rhizomagastrodiae_C368-T10_good_1241.840
SRR6049665Rhizomagastrodiae_C368-T10_good_1241.840
SRP279888GastroGastrodia elata tuber 214.61
JuvenJuvenile tuber225.81
Mother_GastroMother tuber of Gastrodia elata 133.95
Mother_JuvenMother tuber of Juvenile 157.43