Detail information of GWHGAAEX006468/evm.TU.scaffold_184.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17248.00E-77SCF ubiquitin ligase, Skp1 component
nrgi|694997836|ref|XP_009401439.1|3.33E-84PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LNT9|ASK4_ARATH2.00E-77SKP1-like protein 4
trEMBLtr|M0RG66|M0RG66_MUSAM1.00E-81Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P07400_001}
TAIRAT1G201408.00E-77SKP1-like 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018012074911223111+
Transcript Sequence

Network for GWHGAAEX006468

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03931.14Skp1_POZ3624.10E-28
PF01466.18Skp11111582.00E-30
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilySKP1

KEGG pathway

KO Enzyme pathway mapID
K03094SKP1, CBF3D Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Wnt signaling pathwaymap04310
Hedgehog signaling pathway - flymap04341
TGF-beta signaling pathwaymap04350
Cell cyclemap04110
Cell cycle - yeastmap04111
Oocyte meiosismap04114
Circadian rhythmmap04710

Gene Ontology

GO term OntologyName
GO:0006511Biological Processubiquitin-dependent protein catabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms130.390
SRR2545915Juvenile tuber87.560
SRP108465SRR5643513five period of Gastrodia elata92.990
SRR5643514five period of Gastrodia elata91.830
SRR5643515five period of Gastrodia elata87.520
SRR5643524five period of Gastrodia elata84.440
SRR5643525five period of Gastrodia elata118.120
SRR5643528five period of Gastrodia elata130.390
SRR5643658five period of Gastrodia elata108.190
SRR5643659five period of Gastrodia elata89.230
SRR5643660five period of Gastrodia elata90.160
SRR5643661five period of Gastrodia elata100.750
SRR5643662five period of Gastrodia elata98.610
SRR5643663five period of Gastrodia elata98.090
SRR5643664five period of Gastrodia elata109.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_167.840
SRR6049655Rhizomagastrodiae_C368-T10_good_184.060
SRR6049656Rhizomagastrodiae_C368-T07_good_168.140
SRR6049657Rhizomagastrodiae_C368-T07_good_170.140
SRR6049658Rhizomagastrodiae_C368-T04_good_166.620
SRR6049659Rhizomagastrodiae_C368-T04_good_167.670
SRR6049660Rhizomagastrodiae_C368-T01_good_160.020
SRR6049661Rhizomagastrodiae_C368-T04_good_160.720
SRR6049662Rhizomagastrodiae_C368-T01_good_164.870
SRR6049663Rhizomagastrodiae_C368-T01_good_160.530
SRR6049664Rhizomagastrodiae_C368-T10_good_188.140
SRR6049665Rhizomagastrodiae_C368-T10_good_188.140
SRP279888GastroGastrodia elata tuber 89.75
JuvenJuvenile tuber81.91
Mother_GastroMother tuber of Gastrodia elata 80.42
Mother_JuvenMother tuber of Juvenile 85.10