Gene detail

Detail information of GWHGAAEX006469/evm.TU.scaffold_184.21

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743833111\|ref\|XP_010935171.1\|	0	PREDICTED: uncharacterized protein LOC105055134 [Elaeis guineensis]
trEMBL	tr\|B9H1K4\|B9H1K4_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE86041.1}
TAIR	AT4G39790	9.00E-56	Protein of unknown function (DUF630 and DUF632)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000180	1269238	1274015	+

Transcript Sequence
>GWHTAAEX006469 CTTGTTCCGATTAGGGTTTTTCTGTTCATGAACTTTTAACTTTCCTCTAATACCAGGCATCTAGCGCCACCGCTCTGTCGGGTCCCCTTTTCCGTCCCTGTTAGATTTCATTCTGCACCAGCTGTTTTTCTCCCTTCTCGTTACGCTCTATAGTCATTCTACTAGATTTTTTTCTTTCATTCAGGGCCCTCTGTTCTCCTCCCAACATGGGAAACTGCACCGTCTCTAAGCTCGGAGGCGGCGACGAGGAAGAACCGGTCTCCTTTTGCCGTGAGAGGATGCACCACCTCAAATCAGCGGTGGAGCGTCGCAAAATTCTAGCTGACGCTTACGAGCGCTACATTCACTCTATCCATGCTATCGCCGGCGCCATCAACCTCTTCGTAGCCTGTCATTCTTCCACATACCCTGATCTCATTCCTCTCCGATCATCCTCGCCTCCTTCGTCCTCGTCTGATCCCTCCTTACTCCAGCAAACGTCCACCGAGCCCAAAACCGAAGCTCTAGCTTGCCGCTCCTCTGTTTCTTCTTCAAATTTCTGTGCGCCAAGTATAAACTTGAGCGAAGAAAGAGAAGGAGAGCGTTATTTCTTTGCGGAGTTGCCACTGGATTCTGCGTCTGAAATGGAGGAATACGGGTGGGATTTCTTTAACCCATTCAAGGGTTTGACGGCAGCTGTCATGATGGGAGGAGGTCTTGGCCGGAGCACTGCTGAGGACTTGAGGGTTGTGAGAGAACATGAAGGGATTCCTGAGCTAGAAGAGGAGTTGGTGCAAAACGAAAAGAGAGATGCAGTCCCGGTGACAATAGCAGTGGAAGCCATTGAAAGGGAGGAGAAGACAGGGATAGTGGTCGAGAGCGAGGAAGGGGGAGGGACAAAAATACAAGCAAGAGAATTGGCGGCAATGGTGGCTGCAGAAAATAAAATGGAACTGCTTGATGCGCTGAAAGATGTGGAGGAAGAATTTTTAAAAGTTTATGATTCTGGGAAGGATTTAGCTAGAATGCTGGAAGTTGTTATTATGATTGACCATCATCAACCTAGAGATAACCAAATCAAAGAAAATTCATCAAAGTTGGTTCAGGCTATCACATGGCATAGGTCTCTCTCAACTTTGTCCTCCTCCACAAGTTCTTTGGCATTGAACCGTAAGAGCAATTTGCTTAGTGAGGACAGGGGTGAGCTTTTTGATGATTGTGGGGGGATGGAATCAGGAAGCCACTTGCAGACTCTTGGAAGATTGTATGCTTGGGAAAAAAAACTCTATGGTGAAGTAAAGGCCGGAGAACAAACTCGGCAAATTTATCAGAAGAAATGCTTACAGGTTCGAAACCATGATATCAAAGAATCAGGTTCATGCTCACTAGAGAAATCTCTAGTTGCTGCCAAAGACCTGCATGCAAGGATATGGGTCGCCCTGAGGACCATTGAAACAATATCAATCCGAATTCAGAAAGTGCAAGACAATGAGTTGCATCCACAGTTGATTGAATTACTACAAGGCCTGATGAGGACATGGAGATTAATGCTGCAATCACATAGGCGACAAAAACAGCTTATGATTAACATCAGAGCTGTCACTTGCCCCTCTTATGGAAAATACTGCAGTGATTCACAGCATCAGGTGACTAAGAAGCTGGAGGAGCAGGTTGAAAATTGGCTATCTTGCTTCAGGAATTATTCTTCAGCTCAAAAGGCTTATATTGATACTCTTAATGGATGGTATTCCAAGTTTTTTATAGCTGACACACAATATTATTCCAGAAATAGATCTAAATCATCGGCTCTGCCATATAGACAAGGATCGCCTCCTCTTCTCTCAATATTGCGAGAATGGTCGAGTTTATATGGGAAGCTCCCTGATAGATCTGTCATACTCTCCATGAAAGGCTTCATCAACAATCTCAGGGTTTTACTGGTTAAGCAAGGGGAGGAACAGCAGCAGAAAAGAAAAATTGATAACCTTGCTAAAGGTTTTGACATGAGGATTGCAACATTGCAGAAAGCAGATATTAGACATATGGAGTTCAAGCTAGTGGATGTGAAGCTCGAACCGGAGATTCAAGACGGAGTGGAGTACTTGGTTGGGAGAAATAATTTGGTGGACATTTTCAGGCAGAACCTAGAAGCGGAGAATGTGAAACATCAGAATTGCATGCAGGAGACTACGGAAGCTGCCTTGAATGGCTTTAAGTTTGGTTTAGGCCATATTTTTGATTCGCTAGCGGAGTTTTGCAAAGATTCTATGAAATTGTATGCGGAACTTTTGGCTCTAAATGAGAGAGCAGTGGCAGAGAGTGATGCTGTAGCAAAGAAGGCATCTAGCACAGAAGATTCAGAGGAGGAAGTAAATGTTCGATGATTGTATTGTTCAAGTTTGTTTTGTAAATTAATTAAATTATAGTGGCTTCTTTAGGATGTAAGGGAGGAACCTTATAGATTTTGTCAGATTATCAAAAGTTATTTTCGCAGCTCTCAATTTTGTTAATTCAGCTGAAAGCTGTTATAACTTGCAGAGCTTATATTTAGTAGGGAAGCTGCAGTTATTGGTGTTGCAGGGAGCTGCATGGTTGGTGTTAAGTTTTGCTTAAACACTTCTCTTCCTTGAAGTTGATTGATGAGTAAAAAAAAATGTATAAATGATTTTCGTTCTAGTAAATAGTTTAAAGTTTTGATAA

Network for GWHGAAEX006469

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04783.11	DUF630	1	61	4.10E-14
PF04782.11	DUF632	243	568	3.10E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.350
SRP064423	SRR2545915	Juvenile tuber	8.380
SRP108465	SRR5643513	five period of Gastrodia elata	7.980
	SRR5643514	five period of Gastrodia elata	6.140
	SRR5643515	five period of Gastrodia elata	5.130
	SRR5643524	five period of Gastrodia elata	6.970
	SRR5643525	five period of Gastrodia elata	6.540
	SRR5643528	five period of Gastrodia elata	4.830
	SRR5643658	five period of Gastrodia elata	3.030
	SRR5643659	five period of Gastrodia elata	15.160
	SRR5643660	five period of Gastrodia elata	17.390
	SRR5643661	five period of Gastrodia elata	16.820
	SRR5643662	five period of Gastrodia elata	13.010
	SRR5643663	five period of Gastrodia elata	11.100
	SRR5643664	five period of Gastrodia elata	10.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.910
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.430
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.410
SRP279888	Gastro	Gastrodia elata tuber	10.03
	Juven	Juvenile tuber	14.36
	Mother_Gastro	Mother tuber of Gastrodia elata	8.21
	Mother_Juven	Mother tuber of Juvenile	8.41