Detail information of GWHGAAEX006476/evm.TU.scaffold_1849.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256824425|ref|YP_003148385.1| | 5.00E-34 | cell wall-binding protein [Kytococcus sedentarius DSM 20547] |
| nr | gi|695010807|ref|XP_009392091.1| | 1.45E-75 | PREDICTED: subtilisin-like protease SBT5.3, partial [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9MAP5|SBT33_ARATH | 4.00E-65 | Subtilisin-like protease SBT3.3 {ECO:0000303|PubMed:16193095} (Precursor) |
| trEMBL | tr|M0UCS3|M0UCS3_MUSAM | 3.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP27150_001} |
| TAIR | AT1G32960 | 1.00E-64 | Subtilase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00001842 | 1 | 1689 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006476
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 6 | 74 | 4.70E-14 |
| PF00082.21 | Peptidase_S8 | 102 | 276 | 4.60E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.090 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.880 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 1.940 | |
| SRR5643524 | five period of Gastrodia elata | 0.080 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.03 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |