Gene detail

Detail information of GWHGAAEX006482/evm.TU.scaffold_185.9

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2536	3.00E-43	MAM33, mitochondrial matrix glycoprotein
nr	gi\|672110577\|ref\|XP_008796210.1\|	1.30E-80	PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Phoenix dactylifera]
Swissprot	tr\|Q8W487\|YB95_ARATH	3.00E-31	Uncharacterized protein At2g39795, mitochondrial (Precursor)
trEMBL	tr\|M0UAA6\|M0UAA6_MUSAM	7.00E-71	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP18470_001}
TAIR	AT5G02050	3.00E-43	Mitochondrial glycoprotein family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000189	240760	304162	+

Transcript Sequence
>GWHTAAEX006482 GAAATGGTTGCCCCGCAACTACCCAACAGAGACTTTCTTCAGCGTCTAAAACCCTAGCACAGTCCTGCATTCAGGAAAGGGAACGGATTTGTTGAATCCCTGTTTCGCAGAACCGTTCCGAGAGAAATGGCTTATACCTTTGTCAACTTCCTACTCCGCAGAACCGTCCGCTTCCCATTATCCTCTGCTATCTTTGTTCAGCGAATCCCTTCCTTATGCTTCTATTCCACGGCTTATTATTCCACTTCAAGTCATCTGATTCATAATTTTCTGACTCAAAGAGTAACCATAATGAAACCAGCCGCATTCCTTTTTCTTCGTTTTTCTTCTAGCAAGGTGGAAGCTGATGAGAACCTTGAAAATGTTCTTCAGTCCGAGATAGAATGCGCCAATGAAACTGAAGAGCATGGCAGGGAAATTGGTGAGCCGGAAGATTTTCCTTTCGAAATTATTGATAATTCTGGTGATCAAACAGTTATTCTTAAGCGTGAGTTCTTTGGGGAGAACATCCAAGCCACAGTGTATGTCAATTTTGATGGGGAAGATATGAAGAACGTCAGTGAAGATGATAGTGAGGTTGATGATCAGGAGTGCTCTATTGCGTCAAACATTTCTTTGCTTGTAACAATAGACAAAGGGGAGGCCTCTGTTTTGGAAATTGGTTGCAATATCAGTTCTGATCTTGTAATTGAAAGCATGATCCTGAAAAGTACACATGGATCTGATGACCATGGAGCCTACCAAGGACCTGAATTTTCGGATTTGGATGAGAGTTTGCAGAAAACTTTCTACAAGTTTTTAAAAGTGAGAGGCTTTGACAGTTCGCTTCGTGATTTCTTGCTTGAATACATGATGAGTAAAGACGAAAGGGAATATCGTACATGGCTGAAGAATGTGAAGGATTTCATCAGAAATTGAGTAATATCATTCTTTACTGTAGTGTTTGGATCGGAAAAAGCAATGTTGGCATATTATTGCATGTATTTTTTTGAGCTGCTGCTAGTCTTCTTGCAATTTACACTGCAGCAGGGTAATGATGATGGTTGTCTCTTTTCAATTTTTCAGATTATCCAAGCTAAACAGATATGTTTCATTAGAAACTTCTTAAAGCAGTTTATTGGTATCATTAATTACCGTTATTTTCTTAATAACATGAGTTTGATTTATGTTGCTGATGCAATGACAACCACAGCAGCACTTTAGTCCCACCAAGTGAAGTTGATTAGAAGAATCAGTTTTATACTTTGCTTGATTACAAGAATCAGTTTCATAGTTTCATAATAGCTTGTCGTCATATCTTCTTTGGGTTTTTTCTCCTTCTGGCATGTGTGGAATTTATTGACTTGTTCTCATAATTTGGGCATCTCTAATTTTATGTTTAGTGTGTTCACACTGTACAACATGACTTATTTCGATAAGTTTATTTTCAATTGAAGTCGCAACAAACTCTTATCTATTTCACTGCACTTGTTTTATCAGCATGCTTCTGCTTTGCAGAGCATTATTATGTCTCATACAATATTTATGATCTTGCAGCAATCAGGTAAAGTTTTGAGGAACTGCTGTATTGTTTATTTCTGCATCAAGATTCTTGCTATGCTACCCATAAATTCACTAAAGATAAGATAGTGGGGTCAAGCGTAATTTAAGCAAGGGTCGTCGTGCTACAGTGCCCAACAGATTCCGAGCAATTTGAGGAGGTTAACCATTCTGAGGAGCAGATCTAGGAGAAAGTTCAGGTTGCTGAGGATCCATAAACTACTTGCTAGTTTCTTTATTTTTATGCATCATGAGGATGAGAGACACTTTATAATTCAGTCTTTAAACTTTAAACATTTGTAATAATACAG

Network for GWHGAAEX006482

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02330.15	MAM33	81	261	3.20E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005759	Cellular Component	mitochondrial matrix

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.100
SRP064423	SRR2545915	Juvenile tuber	4.890
SRP108465	SRR5643513	five period of Gastrodia elata	3.740
	SRR5643514	five period of Gastrodia elata	3.790
	SRR5643515	five period of Gastrodia elata	3.810
	SRR5643524	five period of Gastrodia elata	3.360
	SRR5643525	five period of Gastrodia elata	1.860
	SRR5643528	five period of Gastrodia elata	1.650
	SRR5643658	five period of Gastrodia elata	0.980
	SRR5643659	five period of Gastrodia elata	5.780
	SRR5643660	five period of Gastrodia elata	5.170
	SRR5643661	five period of Gastrodia elata	3.830
	SRR5643662	five period of Gastrodia elata	4.050
	SRR5643663	five period of Gastrodia elata	4.190
	SRR5643664	five period of Gastrodia elata	4.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.470
SRP279888	Gastro	Gastrodia elata tuber	3.90
	Juven	Juvenile tuber	8.53
	Mother_Gastro	Mother tuber of Gastrodia elata	2.05
	Mother_Juven	Mother tuber of Juvenile	4.66