Detail information of GWHGAAEX006484/evm.TU.scaffold_185.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|14520580|ref|NP_126055.1|6.00E-1133-hydroxy-3-methylglutaryl-coenzyme A reductase [Pyrococcus abyssi GE5]
KOGKOG248003-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase
nrgi|330689863|gb|AEC33260.1|03-hydroxy-3-methylglutaryl-coenzyme A reductase [Vanda hybrid cultivar]
Swissprottr|O24594|HMDH_MAIZE03-hydroxy-3-methylglutaryl-coenzyme A reductase
trEMBLtr|G9CKH8|G9CKH8_9ASPA03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}
TAIRAT1G764900hydroxy methylglutaryl CoA reductase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000189399102415902+
Transcript Sequence

Network for GWHGAAEX006484

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00368.17HMG-CoA_red1715481.30E-141
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00021HMGCR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Terpenoid backbone biosynthesismap00900
AMPK signaling pathwaymap04152
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0015936Biological Processcoenzyme A metabolic process
GO:0005515Molecular Functionprotein binding
GO:0050662Molecular Functioncoenzyme binding
GO:0004420Molecular Functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.090
SRR2545915Juvenile tuber24.550
SRP108465SRR5643513five period of Gastrodia elata85.400
SRR5643514five period of Gastrodia elata100.340
SRR5643515five period of Gastrodia elata81.090
SRR5643524five period of Gastrodia elata96.930
SRR5643525five period of Gastrodia elata25.360
SRR5643528five period of Gastrodia elata34.230
SRR5643658five period of Gastrodia elata30.240
SRR5643659five period of Gastrodia elata28.590
SRR5643660five period of Gastrodia elata21.300
SRR5643661five period of Gastrodia elata33.110
SRR5643662five period of Gastrodia elata22.780
SRR5643663five period of Gastrodia elata23.810
SRR5643664five period of Gastrodia elata20.710
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1104.730
SRR6049655Rhizomagastrodiae_C368-T10_good_194.950
SRR6049656Rhizomagastrodiae_C368-T07_good_1120.780
SRR6049657Rhizomagastrodiae_C368-T07_good_169.890
SRR6049658Rhizomagastrodiae_C368-T04_good_161.420
SRR6049659Rhizomagastrodiae_C368-T04_good_143.300
SRR6049660Rhizomagastrodiae_C368-T01_good_157.400
SRR6049661Rhizomagastrodiae_C368-T04_good_180.010
SRR6049662Rhizomagastrodiae_C368-T01_good_1144.630
SRR6049663Rhizomagastrodiae_C368-T01_good_199.700
SRR6049664Rhizomagastrodiae_C368-T10_good_1154.930
SRR6049665Rhizomagastrodiae_C368-T10_good_1154.930
SRP279888GastroGastrodia elata tuber 19.96
JuvenJuvenile tuber46.09
Mother_GastroMother tuber of Gastrodia elata 34.22
Mother_JuvenMother tuber of Juvenile 40.57