Gene detail

Detail information of GWHGAAEX006487/evm.TU.scaffold_185.16

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|476001837\|gb\|AGI62060.1\|	SQUAMOSA promoter-binding-like 12 [Erycina pusilla]
Swissprot	tr\|Q6Z8M8\|SPL15_ORYSJ	Squamosa promoter-binding-like protein 15
trEMBL	tr\|M9QSC1\|M9QSC1_9ASPA	SQUAMOSA promoter-binding-like 12 {ECO:0000313\|EMBL:AGI62060.1}
TAIR	AT1G20980	squamosa promoter binding protein-like 14

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000189	551958	556460	+

Transcript Sequence
>GWHTAAEX006487 ATGGAGGGAGACGTGGATGCAAGAGTTGCACCTCCTATCTTTATGCACAACCAAGTGCTTCCTGGTCGGTTTTCTGGCGCATCGCCTATGGCGAGAAAGCGGGATTTGCCATGGGGGAATCCTGCTTTCCGCCTTGTTCACCCGAAGCAGCAGAACCATCACTGGCTCACGGAGCTTCCCAATCCCAGCAACTCAAATAGCTGGAACCCTAAGATGTGGGAGTGGGACAGTGTGACTTTCTCTGCAAAACCCTCCAAAGATGTGCCAGAAATGGTTTGTATGGGCACTCAGGGGGTTTCTGGAGCTGCAAATAATGGCAATTGCGTAGAGCAGAGGGATAATGCAGTGGAGAGTGGAAGGGCGCTACTTTTGTCTGAGGGCCTGATGGACGAAGGTGAGACTCTGGCTTTGAATCTTGGCAATGGAGGATGTAGAGTGGAAGAACAAGCTGGGAGAGCTAACAAACGTGTTCGATCTGGATCGCCTGGAAGTTCGGTTAGTTATCCTGTGTGTCAGGTGGATGATTGCAAGGCAGATCTTTCGAATGCGAAAGATTATCATCGGCGGCACAAAGTTTGTGAGCTTCATAGCAAGACAGCAAAAGCCCTTGTCGGCAAGCAGATGCAGCGATTCTGCCAGCAGTGTAGCCGATTCCATCTTCTTGCGGAGTTTGACGAGGGAAAAAGGAGCTGCCGCCGCAGGTTAGCTGGGCATAATCGTCGAAGGAGAAAGACACAACCTGAGGATGCTCCGACCAACATTTTAGCTTCTGGAAACCAAGATGGAAATGCTAGTGGGAGTATGGATATAGTAAATTTGTTGACTATTCTAGCTCGCCTGCAAGGAAATATTGCAGGCAAATCCACAATCATGTCATCTGTACCAGACAGAGACCAGCTTATACAAATTATAAATAAAATTGGTTCTTTTCCTCTTACAAATCCAATCTCCTCTTCAAAAACAGAGATGCAAAGAGGTTTTGATCTTAATGTCTCAGAAGCTCCACAACTGACTTCACAAGTTCCACAGCAAAGTTCTTCAGAGCAGCAATCGCAAGGCAGTGGTAACCCAAGCACTCCATCGACGATGAACTTACTTGGCGCCCTCTCAGCCGCTCTTGCAACATCGAATCCTTATGTTTCTGCAAGCATGTCCCAAGATAGCAGTGATGGTAGTGGAAGTAGCAAGAGTAGGGATGTTTTTCAGGAAGCTGTAGCTGATGATAATTCACAAAGCAGATCTGGTCAGATGTTTCATCCATCTGGAGGCAAAGAAGCTAACTCTTGTGTGCATTCCCAATTGAATTCTTCTGAATTCCCAGGAAAAATTGCAATGCCAAGTTTTCCATTGCAGCTATTTGGATCCGGTGAGGATGATAGTCCCCTGAATCTTGGGTCTGCTAATAAATATCCATCCTCAGAAAGCAGTAATCCAATAGAAGATAGATCTCCTTCATGTTCACCTCCTATAGCAAAAAGGCTTTTTCCTCTGTGTTCAGAATCTGTTAAAAAAGATGAAAGCATGTCTATATGCAGGGAAGACCACGCTTTAGCTGAAGCAAGCACAACCTGTGGATGGTCCCCACCATTAGAACTGCTTAAAAATTCAGACAGGCAACTTGATAATCAAACAATTCATAACACGCCATACCCTGGAGGGTATTCATCACCCTCTAATTCAGATCAATCTCCATCCAGCTCAAACTGTGCTATCCAGGACCGAACTGGTAGAATTATTTTCAAGCTTTTTGACAAAGACCCCAGCACTTTACCTGGAACACTTCGATCTGAGATTTTGAATTGGCTGTCTCGAACCCCAACTGAAATTGAAAGCTACATCAGACCCGGCTGTGTTGTTTTATCGGTTTATTTATGCATGTCACTAGTTGCATGGCACGAGCTGGAGGAGAACTTCCTTCAACGAGTTACTTCACTTGTTAATTGCGCCGATTCAGAATTCTGGAGAAATTCAAGGTTTTTGGCCTGTACTAGTAGACATATTGTTTCTCACAAGGAAGGGAAACTTCGCATCTGCAAGTCATGGAGGTCATTGAGCACTCCTGAACTAACATCCATTTCTCCCATTGCCGTTTTGAGTGGGCAAGAAACTAAACTTATACTTAGAGGTCGCAATTTGACTATTCCTGGAACTAAAATTCACTGCACTTATAAGGGCGGGTATTCATCAAAAGTACTGGGCTCAGCTTACTCCGGCACAATATATGATAATTCCAGTTCTGAAAGCTTCATTCTTCCTAAAGAGTCTTCCTATTCCTATGGACGCTATTACATTGAGGTCGACAATGGTTTCAGAGGGAATTGCTTTCCTGTTCTAATTGCAGATGCTACCATCTGCCAGGAACTAAGATCACTTGAAGTCGAGTTTGATGAAGATGTGAGAACCCTGGATGAGGGTTTGTGGGCACAATCTAGGGAAAATGCACTTCACTTTCTGAATGAACTTGGCTGGTTGTTTCAAAGAAAGAGCCACCCTGATTTTTCATTAGATTTTGCTACTCTGCGGTTCAAGTATCTCTTTACATATTCGGTCGAGAGAGATTTGTGTGCTCTTGTCAAAATGCTTTTAGACTTGCTAGCCAAAAAATGTTCACAGAGTCATTCTGCATTGGATGAATCACTCGAATTATTGCTCGAAGTTCAGCTTCTGAGCCGAGCAGTGAAGAAGAAATGCAGGAAAATGGTTGAGCTGCTTCTAAACTACTCCTTAAAGAGTGCAAAAATAACAAAGGATTCGATGATGTATCTGTTCCCACCTAATTCGGTCGGCCCTGGCGGATTGACCCCTCTGCATCTTGCTGCATCAATGGAGGATGCAGCGGACATAATTGATGCGCTAACAAATGACCCTCAAGAGATTGGATTGAGCTGTTGGGCTTCGGTTTTGGATGACTGCGGCAAGTCACCCTCCATGTACGCATCATCAAGAAACAATTACAACACGCTCGTAGCAAGGAAACTAGCAGACAAGGGCAATGGGCAGGTATCCATCCTGATCAGGCATGATGATGAGCCCTTAAAAAATACATGTGCTGAGGCAAAATCATCAGCCAAGCACGGCAATGCTCGTGGCATAGAAGCGATGATGGCTGCCAGATCATGCACCCGTTGCGCTCTGGCAGAGTCCCACCTTGTTAGGATAAACCGCAGCAGAGGTCTTCTTCATCGCCCATACATCCAATCCATACTAGCAATAGCTGCTGTTTGCGTGTGCGTTTGTGTGTTCTTTCGAGGACCACCATTGGCGGGTTTCATTGCTCCGTTCATGTGGGAAACTCTGGAATTCGGTCCGAGATAG

Network for GWHGAAEX006487

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.13	SBP	171	244	8.50E-29

Protein Sequence

>GWHPAAEX006487
MEGDVDARVAPPIFMHNQVLPGRFSGASPMARKRDLPWGNPAFRLVHPKQQNHHWLTELPNPSNSNSWNPKMWEWDSVTFSAKPSKDVPEMVCMGTQGVSGAANNGNCVEQRDNAVESGRALLLSEGLMDEGETLALNLGNGGCRVEEQAGRANKRVRSGSPGSSVSYPVCQVDDCKADLSNAKDYHRRHKVCELHSKTAKALVGKQMQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNRRRRKTQPEDAPTNILASGNQDGNASGSMDIVNLLTILARLQGNIAGKSTIMSSVPDRDQLIQIINKIGSFPLTNPISSSKTEMQRGFDLNVSEAPQLTSQVPQQSSSEQQSQGSGNPSTPSTMNLLGALSAALATSNPYVSASMSQDSSDGSGSSKSRDVFQEAVADDNSQSRSGQMFHPSGGKEANSCVHSQLNSSEFPGKIAMPSFPLQLFGSGEDDSPLNLGSANKYPSSESSNPIEDRSPSCSPPIAKRLFPLCSESVKKDESMSICREDHALAEASTTCGWSPPLELLKNSDRQLDNQTIHNTPYPGGYSSPSNSDQSPSSSNCAIQDRTGRIIFKLFDKDPSTLPGTLRSEILNWLSRTPTEIESYIRPGCVVLSVYLCMSLVAWHELEENFLQRVTSLVNCADSEFWRNSRFLACTSRHIVSHKEGKLRICKSWRSLSTPELTSISPIAVLSGQETKLILRGRNLTIPGTKIHCTYKGGYSSKVLGSAYSGTIYDNSSSESFILPKESSYSYGRYYIEVDNGFRGNCFPVLIADATICQELRSLEVEFDEDVRTLDEGLWAQSRENALHFLNELGWLFQRKSHPDFSLDFATLRFKYLFTYSVERDLCALVKMLLDLLAKKCSQSHSALDESLELLLEVQLLSRAVKKKCRKMVELLLNYSLKSAKITKDSMMYLFPPNSVGPGGLTPLHLAASMEDAADIIDALTNDPQEIGLSCWASVLDDCGKSPSMYASSRNNYNTLVARKLADKGNGQVSILIRHDDEPLKNTCAEAKSSAKHGNARGIEAMMAARSCTRCALAESHLVRINRSRGLLHRPYIQSILAIAAVCVCVCVFFRGPPLAGFIAPFMWETLEFGPR

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	59.070
SRP064423	SRR2545915	Juvenile tuber	74.920
SRP108465	SRR5643513	five period of Gastrodia elata	38.850
	SRR5643514	five period of Gastrodia elata	37.020
	SRR5643515	five period of Gastrodia elata	39.210
	SRR5643524	five period of Gastrodia elata	38.160
	SRR5643525	five period of Gastrodia elata	50.900
	SRR5643528	five period of Gastrodia elata	47.060
	SRR5643658	five period of Gastrodia elata	51.880
	SRR5643659	five period of Gastrodia elata	62.840
	SRR5643660	five period of Gastrodia elata	72.340
	SRR5643661	five period of Gastrodia elata	58.710
	SRR5643662	five period of Gastrodia elata	47.990
	SRR5643663	five period of Gastrodia elata	50.100
	SRR5643664	five period of Gastrodia elata	63.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	53.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.450
SRP279888	Gastro	Gastrodia elata tuber	52.49
	Juven	Juvenile tuber	43.47
	Mother_Gastro	Mother tuber of Gastrodia elata	36.70
	Mother_Juven	Mother tuber of Juvenile	43.44