Detail information of GWHGAAEX006488/evm.TU.scaffold_185.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256424528|ref|YP_003125181.1| | 7.00E-28 | chitinase [Chitinophaga pinensis DSM 2588] |
| KOG | KOG4742 | 2.00E-153 | Predicted chitinase |
| nr | gi|672117031|ref|XP_008781695.1| | 0 | PREDICTED: chitinase-like protein 1 [Phoenix dactylifera] |
| Swissprot | tr|Q9MA41|CTL1_ARATH | 5.00E-154 | Chitinase-like protein 1 (Precursor) |
| trEMBL | tr|D2KZ17|D2KZ17_9ARAE | 2.00E-179 | Putative chitinase {ECO:0000313|EMBL:BAI63079.1} |
| TAIR | AT1G05850 | 2.00E-153 | Chitinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000189 | 633036 | 641975 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006488
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00182.18 | Glyco_hydro_19 | 95 | 327 | 1.90E-63 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH19 |
| Carbohydrate-Active enzymes Family | GH19 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0006032 | Biological Process | chitin catabolic process |
| GO:0016998 | Biological Process | cell wall macromolecule catabolic process |
| GO:0004568 | Molecular Function | chitinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 88.100 |
| SRR2545915 | Juvenile tuber | 235.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 167.820 |
| SRR5643514 | five period of Gastrodia elata | 217.050 | |
| SRR5643515 | five period of Gastrodia elata | 211.710 | |
| SRR5643524 | five period of Gastrodia elata | 206.700 | |
| SRR5643525 | five period of Gastrodia elata | 829.930 | |
| SRR5643528 | five period of Gastrodia elata | 885.360 | |
| SRR5643658 | five period of Gastrodia elata | 1650.070 | |
| SRR5643659 | five period of Gastrodia elata | 312.570 | |
| SRR5643660 | five period of Gastrodia elata | 269.650 | |
| SRR5643661 | five period of Gastrodia elata | 334.620 | |
| SRR5643662 | five period of Gastrodia elata | 331.120 | |
| SRR5643663 | five period of Gastrodia elata | 365.550 | |
| SRR5643664 | five period of Gastrodia elata | 303.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 196.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 233.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 227.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 186.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 111.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 87.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 156.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 156.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 183.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 143.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 201.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 201.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 252.03 |
| Juven | Juvenile tuber | 97.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 40.48 | |
| Mother_Juven | Mother tuber of Juvenile | 34.52 |