Gene detail

Detail information of GWHGAAEX006489/evm.TU.scaffold_185.19

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|332980995\|ref\|YP_004462436.1\|	9.00E-103	SNF2-like protein [Mahella australiensis 50-1 BON]
KOG	KOG0392	0	SNF2 family DNA-dependent ATPase domain-containing protein
nr	gi\|743804860\|ref\|XP_010927294.1\|	0	PREDICTED: TATA-binding protein-associated factor BTAF1 [Elaeis guineensis]
Swissprot	tr\|B5BT18\|BTAF1_ARATH	0	TATA-binding protein-associated factor BTAF1
trEMBL	tr\|M0SSL2\|M0SSL2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P27500_001}
TAIR	AT3G54280	0	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000189	644473	740953	+

Transcript Sequence
>GWHTAAEX006489 ATTTTATTGGCTCATCCGCCCGACCTTGTCCTCCACCGCTTTTGCTAGCCGCGAGGGTTGAGTTTAAGCGAGCAGGGAGATCGCGAACGAGCGGAAGCACGGAGAAGCTGCAAATGCTGCAAAGACTCCTGAGGCAGATGGCAGATGTTCAGGCCGATAGTTGAACGACGATGGCTTGATGCCCTAGCTCCTTTTTATCTTCAATTTTCTTTTTCCCTGTTTATCTACTTTTCGTGTCCACCGAAAGACGTTTGCAGTGGACTAGATCGTTCTACTTTCTCGTGGGGTTACTGGAATAAGGCTCCATGGCTCAACATTCTTCTCTCCTCCATCGCCTATTAACTTTATTGGACACTGGTTCAACCCAAGTAACGAGATTCACAGCTGCACGACAGATTGGAGAAATTGCAAAATCACATTCTCAGGACTTGATTTCTATTTTGAAAAAGATTTTACAATACCTTCGGAGCAGGAACTGGGATACAAGAGTTGCAGCTGCTCATGCTCTAGGTGCAATAGCCGAAAATGTCAGGCACACATCTTTGATGGAACTAATGTCATCAATTGAATCAGAGATGCTAGAAGTAGGAATTGATGATGTTTCTAAAGTTATGGGAATGCTACTGCCAAATGTTCATCATGAGAATATATCTGGCCTCTCCTTTATCAGCTTTGACATCAACAAAGTTTTAGAGTTTGGCTCTATGTTGTTGGCATCAGCAGGACAGGAATTTGATGTCACAAATGATACCAGTAAAACTCCAGCCGAGAGATTGGCTCGTCAGAAGCAAAGTCTTCGTCGTCGTCTTGGTTTAGATGTTTGTGAGCAATTTATGGATGTTAGTGATATGATTAAGGATGAGGATCTTCTGGCTCCAAAATGTAATTTAAATGGAAATGGACCTAATAGTGGATACCATGTAACCAGATCTGGGCAAAATATTCAGCAGTTGGTAGCAGCCATGGTCCCTGGCTTTCGTCCTAGAAGATTGAGTGCAAGGGAGCTGAATCTTCTAAAAAGAAAAGCAAAAGTCAATGCAAAAGATCATACAAAATACTTGTCTGAGGATGACGAGCTTGAGATGTCAGCTTCCCAGCATTCAGTGGCATCTAAAGGGACTTTAGATAAACCAGAAGCAAACAAGGGTTTTGTGGATGCAGTTATTCATGTAGATAAAGATGGGCATGACGAGGATGGTAGGTGGCCTTTTCAACATTTTGTGGATCAACTTATTCATGATATGTTTGATCCTGTATGGGAAGTGCGCCACGGTTCCATTATGGCCTTAAGAGAAATCCTGAGCCATCATGGTGCCTGTGTCGGAGTGTTGTCTTTGGATTTTAACTTGGAAAAATCCTTTTTTGGTGATATTGAGGGCCGAAAGTGTGATGAAATTATTGGCGAGTCCTTAGAATTTGATCTAAATGTTCAGTTTTCAGCGGATGAGCATGAACCCGCACTAAAGAGGCGCAAGTCTGGGAATGGACTAAATTATTTTGGAAATAATATTTACCCCATTGAGTCTGTTGATGGGGAAATAAAGCATAGTGCTAGCATGGAAACAGCTGCTGGGATCAATGTCAATCCTGCATTGATTAATGGTGACACTGTTGGCCCTCATGTTAAGGTTGAGATGGAGCCTTCTCCTGATTATCTTAATTTTCATTGCAAGGTGGAGGATGATGCTTCACTTGGTTCATCTGCTGAAGATAGTTGCTCCATTTCCAATTTCAAAATCTTCTTGGATCTTCCAAGCACTTCCAAACTTAAGAAGTTAATAAAATTAGCAAGGTATTCCCGGATGAAAAACTGGGAATTTTTGCAAGATTGTGCTATCAGGTTTTTGTGCATACTCTCCTTGGATCGATTTGGTGATTATGTTGCCGACCAAGTTGTTGCACCTGTTCGTGAAACTTGTGCTCAAGCTCTTGGGGTGGTTTTAAAGTACATGCATCCTTCACTGGTTATAGAAACATTGAGGATTTTGTTACATATGCAGTGCCGACAAGAATGGGAGGTACGTCATGGTTGTCTACTTGGGATCAAATATCTTGTTGCTGTTCGTAAGGAAATGCTTCAGGATTTGTTACCTTATATTCTGCCTGCATGCAAAGCTGGACTTGAAGATCCAGATGATGATGTTAGAGCAGTTGCAGCTGACTCTCTTATACCTGCAGCAGCAGCCATTGTTTCTCTTAGTGATAATGTGCTTCATTCAATTGTCATGTTACTTTGGGATATTTTGCTTGATCTCGATGACCTGAGTCCATCAACTAGCAGTGTAATGAACTTGCTGTCTGAAATATATTCTCAACCAGAAATGGCTCCGAAGATGCTGGGAACACTGAAAGCTGATAAAGAAGCTCTTGATCTTAACCAACTATCTCAAGGACGTGGGGATGTGGCTAAATATGGGGATAATCCGTATGTTTTATCTAAACTAACGCCTAGATTGTGGCCTTTCATGAGACACAGCATCACATCAGTTCGCCATTCTGCAATACGTACTTTGGAAAGGCTTCTTGAAGTTGGTAATAGACAGAGCTCTTCGGAGTCCTTGGATAATGGATTTTGGCCAGCTACTATATTGGGTGATGCTTTGCGTATTGTTTTTCAAAATCTCCTTCTAGAATCAAATGATGCAGTCCTTGCATCATCCGAGAGGGTTTGGAGGCTTCTACTTCAGTGTCCAGAGCAAGATTTGGAAGCTGCTGCAAAGTTATATTTTTCTTCTTGGTTGCATCTTGCTGCCACTCCATACGGCTCTGCATTGGATGCCTCAAAAATGTTTTGGCCGACTGCTCTTCCTCGCAAAAGTCATTTTAGAGCAGCTGCTAAGATGAGGGTTGTAATGGGTGAAAATGACTCTGATACATGCTTAGCTTTAAATGTACTAAAGGGAAATTTGTTGCAGGAAAAAAATAGAATTGATGTTGCAACTATTAGCCCTAAAATTATTGTAGGTGCGGATAGTGATAAATCTGTCACACATACAAGAATAGTTACAGCTTCGGCTCTTGGCATCTTTGTTTCCCGATTGCCCGAAGTTTCTGTTCCTATTGCTATTTATCCAATATGGAATGATCTTACTTCTTTTTCAGGAGTTCAGAGGCAGGTAGCCTCTATGGTTCTTGTTGCTTGGTTTAAAGAATTGCTCAACCATGACTGTGAAAATGTACATGGAAACTTATTTGGTCCTCTAAAGTATGTCAAAAATTGGCTTTTGGATTTGCTAGGGTGTTCTGATCCTTCATTTCCAACCAAGAATTCTCTTCTTCCTTATTCTGAGCTTTCAAGAACTTATGCAAAAATGCGTAATGAAGCCAACATTCTGTTCCGGTTAGCCAAGTCCTGCAGTAGGCTTCAGAGTTATATTTCTACTTTGAATTTTTTTTGGGATACACTGAGTATTGATGAGGCAATCAACTTTACTTCAAAGCTATCAGAGACCATTGATTCTGTAACGATTGAAAGAACTACTATGAATGATCTTGAGTCTGCCAAACAACTACTTCTATCTACTACAGGGTATTTGAAATGTGTACAGAACAACTTGCATATTACTGTTTCATCAATGGCTGCTGCTGCTGTGGTGTGGATGTCAGACCTTCCTGCAAAGCTTAATCCAGTCATTTTACCTTTAATGGCTGCTGTAAAGAGGGAACAGGAAGAACTTTTACAACAAAAGGCCGCAGAAGCTCTTGCTGAGCTAGTTTATAGTTGTATTGGGCGAAAACCTGGTCCAAATGACAAACTTGTTAAAAATCTATGCATTTTAACTTGTGCAGATACTTTAGAAACTCCTCAGGCAGCACACATTGGTTCAATGGATTTCGTTTTAGAAGATTCCAATATTTTCACATTGGGTAGATTGCCAAGTATTCAAAAGTCAAGGGTCCAACTTGTATCTGCCAGTGAGGATAGAGCAAAGTTAGAGGGTTTTATATGCAGAAGAGGAGCAGAACTGACTCTCAAGCATCTATGCGAAAAATTAGGGCCTTCTTTATTTCATAAAATTCCAAAGCTTTGGGATTGCCTTGTGGAGGTTCTCAAACCTGTGCACTCTGATGAAGACATACATAATTTGGAGATTCTTGAAATGTCTACTACTACAGATTTTCAAATTTTGATCAACAACATTCAGCTTTTGCGCTCAATTACACCTTTTGTGGATGAGTCACTGAAACAGAGATTGTTAATCCTCCTTCCCTCAGTTCTTAGCTGTGTTCGTCACTACCATATTGCTGTTAGGTTGGCAGCATCTAGATGCATCGCTTCAATGGCCAAATCAATGACAACTAGCATCATGAGAGTGGTCATTGAAAAAGCTATTCCTATGTTGTCTGATAGTTCATCTTTGCATGGTAGGCAGGGAGCTGGAATGCTTGTGACATTACTTGTTCAAGGTTTGGGATTGGAGCTAGTTCCTTATGCTCCTCTACTTGTTGTACCACTTCTTAAATGTATGAACGATTGTGACTTTAGTGTCAGGCAAGGTGTGACACACAGTTTTGCTGCACTTGTACCATTGTTGCCATTAGCTAGAGGAGTTCCTCCTCCATCTGGCCTGAGTGAAAGCTTATCAAGAAATAATGAAGATGCACAATTCTTAGAGCAGCTTCTTGACAATTCCCATATTGATGATTACAAGCTCCCAATTGATATCAAAATGAATTTACGGAGGTATCAACAAGAAGGAATTAACTGGTTATCTTTTCTAAGACGGTTTAAACTACATGGGATATTGTGTGATGATATGGGACTTGGCAAAACTCTTCAAGCATCCGCAATAGTAGCTGCTGACTTAGCAGAGCAGCGTGCCATCAATAATGGAAAGGATCCTTTATCATTAATAATATGCCCTTCCACATTAGTTGGTCATTGGGCATATGAAATTGACAAGTACATTGATAGATCTGTGATGCTTACTCTTCAATATACTGGTTCGGTCTCAGAAAGGATGCCACTTCGTGGAAAATTTGACAAGTACAATATCATTATAACATCTTATGATATTGTTCGTAAAGACATTGATTTCCTTGGAAAGCTTGATTGGAATTACTGTATTTTAGATGAAGGACATATCATCAAGAACTCCAAATCTAAAATAACTCATGCAGTTAAACAGTTAAAAGCTGAGCACCGTCTTATCTTGAGTGGAACACCAATACAGAATAATGTCCTGGAGCTTTGGTCCCTCTTTGACTTTTTAATGCCCGGATTTCTTGGTACAGAGAGGCAGTTTCAAGCAACATATGGAAAGCCGTTGCTTGCTGCTAAAGATTCGAAATGTTCTGCTAAAGATGCTGAAGCAGGGATTCTTGCTATGGAAGCCTTACATAAACAGGTCATGCCTTTCCTGCTCCGACGAACGAAGGATGAGGTTTTGTCGGATCTTCCGGAGAAAATTATTCAGGACAGATACTGCTACTTAAGTCCTGTGCAGCTAAGACTATATGAGCAATTTTCAACTTCAGATTCTAAGAGGGAAATATCATCATTAGTTACAGAGAGTGAGGCCACTAGTGAAATCGTTGAAAAAGTTTCCCTCAAAGCAACTTGTCATGTCTTCCAGGCATTACAGTACTTGTTAAAACTCTGTAGTCATCCATTGCTTGTGATTGGTGAAAAGCCTTCGGAATCCATGAAAGGACTTCTTGCTGAAACCATCCCTGATTGCAGTGATCTTCTCTCAGAGCTTCATGGACTGCACCATTCTCCAAAACTTGTAGCTCTTCAAGAAATTTTGGAAGAGTGTGGGATTGGCATCAACTCAGTGAGTTCAGAAGATGCTGTCTTAGTAGGGCAGCACAGAGTTTTGATATTTGCTCAGCACAGATCCCTTTTGGATATTATCGAGAGGGATCTATTTCGTACTCACATGAAGAGTGTCACATTTTTACGGCTCGATGGATCTGTGGAACCAGACAAACGATTTGAAATTGTAAAAACATTCAATTCTGATCCAACAATAGATGTGCTACTACTGACAACGCATGTTGGTGGGCTTGGCTTGAACTTGACTTCGGCTGATACTTTGGTCTTTATGGAGCATGATTGGAATCCTATGAAAGATCACCAGGCGATGGACCGGGCTCATCGGCTTGGCCAGCGAAAAGTTGTGAATGTTCATCGCATCATCATGCGGGGAACCCTGGAAGAGAAGATTATGAGCCTTCAGAAGTTCAAAGTCTCTGTCGCTAATGCTGTCATCAATGCCGAAAATGCGAGCATGAAAACAATGAACACAGACCAATTACTTGATCTCTTTACCCCTGTTTCAGCCTTCGGAAAGGTTGCCGGCTCCGATGGTGGGAGGGATGAGGGTACGAGCGCTGCTGCAGGTAAGAAGGGCCTGAAGGCTTTACTCAGCGGGCTTGAAGAGCTTTGGGATCAGTCCCAGTATTCTGAAGAGTACGATCTCAGTCATTTCTTGGGGAAGCTGAATAATGCCTGAAACCCCGTTTTTGTTCAGATTTTTGACGGAAAAAGAAAAATTTTGTTCTTTCTTTTGTATATTATTATGTTTATTTGATTATTAAAAAGGACTTTGCTAACAAAATTGTGGGGCCAACTTTGCTCAACGACTGTATGCCAGCCTTTATTTAACAAGAAAACAAAGGATGAGCATGGCATTATTTAAGGTTCATGTATAAATATGTTATTACTCGGCTATAATGTAGCTTCCTCTAAATGTAATGTTTTTTCATTTTTAATCAGCAGAATGCTGATTTTTTTTTTGTTAATCAAGTTTTTTTTATCTTTGAGCATTTTTAGTTGAATATCGCCATCCTGTATGCTTACTGGCAATTACAG

Network for GWHGAAEX006489

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13513.5	HEAT_EZ	570	621	1.60E-05
PF12054.7	DUF3535	788	1244	2.60E-98
PF00176.22	SNF2_N	1478	1771	5.70E-60
PF00271.30	Helicase_C	1834	1935	7.70E-14

Protein Sequence

>GWHPAAEX006489
MAQHSSLLHRLLTLLDTGSTQVTRFTAARQIGEIAKSHSQDLISILKKILQYLRSRNWDTRVAAAHALGAIAENVRHTSLMELMSSIESEMLEVGIDDVSKVMGMLLPNVHHENISGLSFISFDINKVLEFGSMLLASAGQEFDVTNDTSKTPAERLARQKQSLRRRLGLDVCEQFMDVSDMIKDEDLLAPKCNLNGNGPNSGYHVTRSGQNIQQLVAAMVPGFRPRRLSARELNLLKRKAKVNAKDHTKYLSEDDELEMSASQHSVASKGTLDKPEANKGFVDAVIHVDKDGHDEDGRWPFQHFVDQLIHDMFDPVWEVRHGSIMALREILSHHGACVGVLSLDFNLEKSFFGDIEGRKCDEIIGESLEFDLNVQFSADEHEPALKRRKSGNGLNYFGNNIYPIESVDGEIKHSASMETAAGINVNPALINGDTVGPHVKVEMEPSPDYLNFHCKVEDDASLGSSAEDSCSISNFKIFLDLPSTSKLKKLIKLARYSRMKNWEFLQDCAIRFLCILSLDRFGDYVADQVVAPVRETCAQALGVVLKYMHPSLVIETLRILLHMQCRQEWEVRHGCLLGIKYLVAVRKEMLQDLLPYILPACKAGLEDPDDDVRAVAADSLIPAAAAIVSLSDNVLHSIVMLLWDILLDLDDLSPSTSSVMNLLSEIYSQPEMAPKMLGTLKADKEALDLNQLSQGRGDVAKYGDNPYVLSKLTPRLWPFMRHSITSVRHSAIRTLERLLEVGNRQSSSESLDNGFWPATILGDALRIVFQNLLLESNDAVLASSERVWRLLLQCPEQDLEAAAKLYFSSWLHLAATPYGSALDASKMFWPTALPRKSHFRAAAKMRVVMGENDSDTCLALNVLKGNLLQEKNRIDVATISPKIIVGADSDKSVTHTRIVTASALGIFVSRLPEVSVPIAIYPIWNDLTSFSGVQRQVASMVLVAWFKELLNHDCENVHGNLFGPLKYVKNWLLDLLGCSDPSFPTKNSLLPYSELSRTYAKMRNEANILFRLAKSCSRLQSYISTLNFFWDTLSIDEAINFTSKLSETIDSVTIERTTMNDLESAKQLLLSTTGYLKCVQNNLHITVSSMAAAAVVWMSDLPAKLNPVILPLMAAVKREQEELLQQKAAEALAELVYSCIGRKPGPNDKLVKNLCILTCADTLETPQAAHIGSMDFVLEDSNIFTLGRLPSIQKSRVQLVSASEDRAKLEGFICRRGAELTLKHLCEKLGPSLFHKIPKLWDCLVEVLKPVHSDEDIHNLEILEMSTTTDFQILINNIQLLRSITPFVDESLKQRLLILLPSVLSCVRHYHIAVRLAASRCIASMAKSMTTSIMRVVIEKAIPMLSDSSSLHGRQGAGMLVTLLVQGLGLELVPYAPLLVVPLLKCMNDCDFSVRQGVTHSFAALVPLLPLARGVPPPSGLSESLSRNNEDAQFLEQLLDNSHIDDYKLPIDIKMNLRRYQQEGINWLSFLRRFKLHGILCDDMGLGKTLQASAIVAADLAEQRAINNGKDPLSLIICPSTLVGHWAYEIDKYIDRSVMLTLQYTGSVSERMPLRGKFDKYNIIITSYDIVRKDIDFLGKLDWNYCILDEGHIIKNSKSKITHAVKQLKAEHRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQFQATYGKPLLAAKDSKCSAKDAEAGILAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCYLSPVQLRLYEQFSTSDSKREISSLVTESEATSEIVEKVSLKATCHVFQALQYLLKLCSHPLLVIGEKPSESMKGLLAETIPDCSDLLSELHGLHHSPKLVALQEILEECGIGINSVSSEDAVLVGQHRVLIFAQHRSLLDIIERDLFRTHMKSVTFLRLDGSVEPDKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMKDHQAMDRAHRLGQRKVVNVHRIIMRGTLEEKIMSLQKFKVSVANAVINAENASMKTMNTDQLLDLFTPVSAFGKVAGSDGGRDEGTSAAAGKKGLKALLSGLEELWDQSQYSEEYDLSHFLGKLNNA

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.880
SRP064423	SRR2545915	Juvenile tuber	17.820
SRP108465	SRR5643513	five period of Gastrodia elata	9.130
	SRR5643514	five period of Gastrodia elata	10.510
	SRR5643515	five period of Gastrodia elata	9.420
	SRR5643524	five period of Gastrodia elata	9.660
	SRR5643525	five period of Gastrodia elata	11.610
	SRR5643528	five period of Gastrodia elata	9.980
	SRR5643658	five period of Gastrodia elata	10.790
	SRR5643659	five period of Gastrodia elata	9.550
	SRR5643660	five period of Gastrodia elata	10.570
	SRR5643661	five period of Gastrodia elata	9.110
	SRR5643662	five period of Gastrodia elata	9.350
	SRR5643663	five period of Gastrodia elata	10.260
	SRR5643664	five period of Gastrodia elata	11.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.610
SRP279888	Gastro	Gastrodia elata tuber	13.08
	Juven	Juvenile tuber	15.69
	Mother_Gastro	Mother tuber of Gastrodia elata	15.27
	Mother_Juven	Mother tuber of Juvenile	21.07