Detail information of GWHGAAEX006498/evm.TU.scaffold_185.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296242589|ref|YP_003650076.1| | 1.00E-43 | 30S ribosomal protein S19 [Thermosphaera aggregans DSM 11486] |
| KOG | KOG0898 | 2.00E-86 | 40S ribosomal protein S15 |
| nr | gi|672145083|ref|XP_008796450.1| | 5.77E-104 | PREDICTED: 40S ribosomal protein S15-like [Phoenix dactylifera] |
| Swissprot | tr|Q945U1|RS15_ELAOL | 1.00E-105 | 40S ribosomal protein S15 |
| trEMBL | tr|B3TLS1|B3TLS1_ELAGV | 1.00E-103 | 40S ribosomal protein S15 {ECO:0000313|EMBL:ACF06502.1} |
| TAIR | AT5G09500 | 2.00E-86 | Ribosomal protein S19 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000189 | 1141313 | 1146210 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006498
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00203.20 | Ribosomal_S19 | 51 | 136 | 1.30E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02958 | RP-S15e, RPS15 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
| GO:0015935 | Cellular Component | small ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 123.200 |
| SRR2545915 | Juvenile tuber | 139.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 258.470 |
| SRR5643514 | five period of Gastrodia elata | 360.770 | |
| SRR5643515 | five period of Gastrodia elata | 278.740 | |
| SRR5643524 | five period of Gastrodia elata | 325.420 | |
| SRR5643525 | five period of Gastrodia elata | 190.480 | |
| SRR5643528 | five period of Gastrodia elata | 219.010 | |
| SRR5643658 | five period of Gastrodia elata | 168.580 | |
| SRR5643659 | five period of Gastrodia elata | 230.120 | |
| SRR5643660 | five period of Gastrodia elata | 207.760 | |
| SRR5643661 | five period of Gastrodia elata | 235.000 | |
| SRR5643662 | five period of Gastrodia elata | 167.800 | |
| SRR5643663 | five period of Gastrodia elata | 180.880 | |
| SRR5643664 | five period of Gastrodia elata | 153.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 213.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 470.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 294.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 179.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 203.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 164.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 227.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 217.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 384.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 334.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 433.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 433.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 256.52 |
| Juven | Juvenile tuber | 216.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 172.61 | |
| Mother_Juven | Mother tuber of Juvenile | 139.39 |