Gene detail

Detail information of GWHGAAEX006499/evm.TU.scaffold_185.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|57640952\|ref\|YP_183430.1\|	5.00E-51	chromosome segregation ATPase [Thermococcus kodakarensis KOD1]
KOG	KOG0996	0	Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C)
nr	gi\|743805591\|ref\|XP_010927483.1\|	0	PREDICTED: structural maintenance of chromosomes protein 4-like [Elaeis guineensis]
Swissprot	tr\|Q9FJL0\|SMC4_ARATH	0	Structural maintenance of chromosomes protein 4
trEMBL	tr\|I1PWX6\|I1PWX6_ORYGL	0	Structural maintenance of chromosomes protein {ECO:0000256\|PIRNR:PIRNR005719}
TAIR	AT5G48600	0	structural maintenance of chromosome 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000189	1208131	1226865	+

Transcript Sequence
>GWHTAAEX006499 AATCTTAAAAAAATATCTTGAGGCAGTGCGAACTAGGGCATCATATCAGAGCTCTCATTAGAAAGCTTGTCGTGCCTCTTAAACAGGAAATAAACTGACTGAAGTTTTTGGATTGTTCTATATGTATAGTATGTGCACTTTGTTTGCTAGTTTCTCAAGTACATTTGGAGCTTGAAACTATACACTCTAGGATCTTGACAATGAAATGAGGGTCTGTAAGGATGAATTTAAGAAGTTTGAGAGGAAGGATGTCAAATACCAAGAAGACCGTAAACATTTGAAGCAAAAAATTAAAAAATGTGATGACAAACTCACTAAGGACTCGTCAAAAATTGATGAAATAATGAAGGAAAATGAGGAGTCATCAATTATAATCCCAAAATTTGAGGAAGAGATACCCAACTTGCAGCGACTTCTTCAAAATGAAGAGAAGAATTTGGAAGAAATTATAGAGAGCTCTAAAGTTGAAACAGAAATATATTTTTCCGAGCTCAATCGACTTCGCACAGAATTAGAACCATGGGAGAGCAAATTAATCGAACATAAAGGAAAAGTTGATGTTGCTCGCTCTGAGAGCCATTTGTTGAAGGAAAAGCATGCAGCTAATTGCACAGCTTATGAGGATGCTCAACAGCAATTACGTGATATAAAGGATAAATTGCATGTAAAGAATGATTATATTTCTGAACTTCAAGCTAAAATTGCTAAAAACAAGCTTGAAGCATTAGAAGCCCAAAAATTAGAACAGGCATGCTGCCATCATTATCTTTTGTGTATCTTCTATGCCATGGATTTTTATTTAGTGAATGACCACTTATTGTGTTTTGTTTCACAGGAATGCATTTTGAAGCAAGATTCACTTATTCTTCTTGAGCATGGTGCTAGGCAGAAGGTAGCAGAATTTGAGTGTACATTACAAGCAGAGCAAAGTCAGGGCTCCGTTTTGAAAGAAATATTGCTAGCCAAGGAATCAAGAGAAATAGAAGGAATTTATGGCCGACTTGGAGATCTTGCAAAGTATGATATTGCTATATCAACAGCATGCTCAGCGCTAGATTATATTTTAGTTGAGACAACGGATGCTGCTCAAGCATGCGTGGAATTATTGAGGAAGAAAAATCTTGGCATCGCCACTTTTATGATATTGGAAAAACAAACGGGATATGCACATAAACTACAACAGAAAGCTAGAACACCTGAAGGAGTTCCACGACTTTTTGATCTAGTTAAAGTCAATGAAGATCGTTTGAAGCTAGCTTTTTATGCTGCCTTGGGAAACACAGTTGTGGCAAAAGACCTTGATCAGGCTGCTAGGATTGCATATGGAGAGGATAGAGATTATCGCCGTGTAGTGACTCTAGAGGGAGCTTTATTTGAGAAGTCTGGTACAATGAGTGGGGGAGGAAGCAAACCACGTGGAGGCAAGATGGGAACATCAATCAGAACAAGTGTTTCAGCTGATGCCATTACTGCTGCCAAGAAAGAGCATTCTGAACTAGAGGATCAGCTCAAATATGTACGTCAAAGAATCAATGATGCTACAAAATGTTATCAGGCTTGTGAAAAAGCGGAATCTCATCTTGAGCTTGAACTAGCAAAGAGTCAACAAGAGGTTGGAAGTTATGCTACTCAACATAGTTACATAGAAAAACGGCTTGATTCTTTGAAGGTTGCGTCAGAACCAAATAAGGATGAGCTGAATAGGCTTAAGGAGTTGGAAGGTATTGTATCTGCTGAGGATAAGGAAGTGGACAAACTTTCTAAATGTTCTTCTAAGCTTAAAGATCGAGCCATGGAACTTCAGAATAAAATAGAAAATGCTGGTGGTGAAGCACTAAAAATTCAGAAAATGAAAGTTTCAAATATTCAATCTAATATCGACAAAGCTGGAAGTGAGGTAAACCGCTTAAAGGTCAAGATAGCTTCTGATGAGAAATTGGCAAAGAAATTGACAAAATCAATTAATGACTTGAAAAAAGAGAGGGATAATCTTATTGAAGAGAAAGAGAAAATGGAAGATTCTTTCAAATTAATTGAGCAAAAGGCATTCGAGGTCGAGGAAAATTATAAGAAAACTCAAGTGCTCCTTGATAAGCATAAGGATGCTTTGGATGAAGCTAAGGCTGAATATAACAAATTGAAGAAAAATTTGGATGAACAACGTGCTGCTGAGGTTGACAATGATTATAAACTGCAAGATGTGAAAAAGGTATTGAAAGAATGGGAGATGAAAGTAAAGGGTTTCAAGAAAATTATCATTGATATTGAAAAGGATATAGGAAAACAGTTGGATCAGGTACAAAGGGATGCTCTTGATCCAGACAAGCTTCAAGCAACACTGACTGATTGCTCCTTGAGTGATGCCTGTGATCTCAAAAGAGCAGCAGAAATGGTAGCATTGGTAGAAGCTCAGTTGAAAGACATGAATCCCAACTTGGATTCAATTACTGAATATCGGAAAAAGGTACTATTGTACAATGAACGTGTGGGAGAACTTAATGCTGCAACACAGGAGCGTGATGATCTTAAAAGACAGTATGATGGGTTCAGGAAGAAAAGACTGGATGAATTTATGTCAGGATTCAACATTATTTCCCTGAAGTTGAAAGAAATGTACCAGATGATCACTCTAGGGGGTGATGCTGAACTAGAGCTTGTTGATTCTCTGGATCCTTTCTCAGAGGGCGTTGTTTTCAGTGTGAGGCCCCCAAAGAAGAGCTGGAAGAATATTGCCAACTTATCCGGAGGGGAAAAGACCCTTAGCTCGCTGGCGCTTGTGTTTGCACTCCACCATTTCAAGCCGACCCCAGTCTATGTCATGGATGAGATTGATGCCGCTTTAGATTTCAAAAATGTCTCAATCGTCGGCCACTACATAAAGGAACGCACTCGGGACGCCCAATTCATTATCATAAGCTTGAGGAACAACATGTTTGAGCTTGCGGACAGACTGGTTGGCATTTACAAGACTGATAACTGCACCAAAAGCATCACAGTAAATCCCCAGAGCTTTGTTGATTCCAGATAA

Network for GWHGAAEX006499

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06470.12	SMC_hinge	260	372	1.70E-18
PF02463.18	SMC_N	566	927	2.30E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06675	SMC4	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0051276	Biological Process	chromosome organization
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding
GO:0005694	Cellular Component	chromosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	58.710
SRP064423	SRR2545915	Juvenile tuber	49.880
SRP108465	SRR5643513	five period of Gastrodia elata	32.790
	SRR5643514	five period of Gastrodia elata	31.870
	SRR5643515	five period of Gastrodia elata	28.700
	SRR5643524	five period of Gastrodia elata	30.000
	SRR5643525	five period of Gastrodia elata	23.340
	SRR5643528	five period of Gastrodia elata	16.070
	SRR5643658	five period of Gastrodia elata	24.530
	SRR5643659	five period of Gastrodia elata	32.180
	SRR5643660	five period of Gastrodia elata	34.140
	SRR5643661	five period of Gastrodia elata	31.350
	SRR5643662	five period of Gastrodia elata	26.020
	SRR5643663	five period of Gastrodia elata	32.000
	SRR5643664	five period of Gastrodia elata	29.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.350
SRP279888	Gastro	Gastrodia elata tuber	54.80
	Juven	Juvenile tuber	39.36
	Mother_Gastro	Mother tuber of Gastrodia elata	41.99
	Mother_Juven	Mother tuber of Juvenile	36.57