Detail information of GWHGAAEX006500/evm.TU.scaffold_185.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434385068|ref|YP_007095679.1| | 8.00E-17 | glycosyl transferase [Chamaesiphon minutus PCC 6605] |
| nr | gi|720033101|ref|XP_010266321.1| | 0 | PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|Q69V23|CESA3_ORYSJ | 0 | Probable cellulose synthase A catalytic subunit 3 [UDP-forming] |
| trEMBL | tr|M0U6F7|M0U6F7_MUSAM | 0 | Cellulose synthase {ECO:0000256|RuleBase:RU361116} |
| TAIR | AT5G64740 | 0 | cellulose synthase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000189 | 1368870 | 1375093 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006500
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14569.5 | zf-UDP | 29 | 105 | 8.70E-41 |
| PF03552.13 | Cellulose_synt | 357 | 1084 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
| Carbohydrate-Active enzymes Family | GT2 |
| Carbohydrate-Active enzymes Family | GT2 |
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 96.310 |
| SRR2545915 | Juvenile tuber | 210.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 204.600 |
| SRR5643514 | five period of Gastrodia elata | 279.120 | |
| SRR5643515 | five period of Gastrodia elata | 267.710 | |
| SRR5643524 | five period of Gastrodia elata | 269.380 | |
| SRR5643525 | five period of Gastrodia elata | 130.830 | |
| SRR5643528 | five period of Gastrodia elata | 129.050 | |
| SRR5643658 | five period of Gastrodia elata | 122.820 | |
| SRR5643659 | five period of Gastrodia elata | 411.370 | |
| SRR5643660 | five period of Gastrodia elata | 385.030 | |
| SRR5643661 | five period of Gastrodia elata | 424.820 | |
| SRR5643662 | five period of Gastrodia elata | 331.990 | |
| SRR5643663 | five period of Gastrodia elata | 418.000 | |
| SRR5643664 | five period of Gastrodia elata | 286.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 180.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 141.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 200.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 165.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 96.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 90.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 201.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 143.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 195.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 200.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 178.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 178.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 282.92 |
| Juven | Juvenile tuber | 353.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 83.83 | |
| Mother_Juven | Mother tuber of Juvenile | 195.41 |